Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1263 ATGGCCGGCTCCGGGATCCGGCAGCTGCTGTGGGTGATATGGATACCCAAATCAAGAAGACATACACGGCGAGGAGGTGTTGAGGAATTCTTAGGCACTCTTTCCTGGGAGGTCTTTTATTGCGATAACGTGAAATGTTGCATGTCAAGTTACACAGGAAAGTCCAGTCGCAGTGCACGGTTGCGTAGCTCCTCTTCATCTCTTGATGCCGAAATTCACTCCGTTGCTTCTTCGAGTAGACAATGCCTTTCATCTCGCAAATTCAACGTCAATCTGATTACAATCTCTTCAGTTCCACCACTCCGATCGTCATTGACAATGGCGCATCATATTTTCGTATCGGGAGAGACTGAACCCCGTGTTGTTTTCCGCAACATTGTGCAAAGGCCACGTCATAAAGTCACCGGCATGTCCCTCACTCCACGATGTTTTCTGCGTCATCTCGATCTTCCTACTGCATATGTGCTTGTATGTGTCTGGAAGAAGAGCTGGAAGAGTTTTGGACGAGCAATTGTGGTTCTGAGTCTTTTTTCCTTCAGTGAAACTGTTACTATTGTTGGTGATCATAATCCAGCATTAATGAAATACTTTGACTGCACTCGTTCTGGACCACGCTCAGCATTTGATAGCAATGTTGTTTACCAGTTTGAAATAATGGAATACGTAAGCTTCCTTTTAATCACATTGTTTATGAACAAAGGAGGGATATTGGTTTTGGCCTGTCGGTTAGATGCATGTTATGTTAAGCTTCCACTGAATCCGATCATCATTCATCCTGTAGTCTTTCATTTTTGTATTGTCATGTGCAAATGGCTCAGAGAGCAGATTGATCATCCTGTCCTGATCACAGAATGCGTGTGTAATCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGTGTTCCATCAATAGCCTTTGGGGTTGATGCAGCTTTCAGCTACAAGTATAATCAACACCATGGAGTTTGCAATAAAGATGGTCTTGCTATGTGTCCTGGATTTACCACAACCCACGTGATTCCGTTTGTAGATGGGGAACCTGCTTATAAAGGATGCTGCCGTACAAATATTGGTGGTTTCCATGTAACTGATTATTTAAAGCAACTTCTTTCAATTAAATATCCCTACCATTTGGCTAGATTTACATGGGAAAAGGTTGAAAACCTGAAGATGGAACATGGTTACATTGCACAGACTTATGCTTCTGAAGCTCGGTTGTTTCAGAGAGGAGGGAAGGAAGCTGAAGAGAAAACCAGATGCTGGCAGCTCCCTTGGGTTCCACCACCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATTAGAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCAAAAAGATCATCCAGAATAAATGAACTGGAAAATGAATTGCATGGCTTGGATTTTCTCTTACAGCAGCTTGAGCAAGTTGAGGAGAGTGACATTCCATCTTTCCTATCAGACACTGGCTATGTCTCTAAGCAGGAGGTAGAATCTGCCCGTGTCAAAGTTACACAATCTTTACGGAAAGCAAAAGGTGAACCAAAGAGTGAACAAGCTGAAACTGAAAAGGCTGACTCTGGTAATAACGAGAAGTACTCTCTTATAAACATCCCTGATGAAACACTAACCCCAGAACAGAAGAAGCAGTTGTCACTCAAGTCCATGTCTGAGGGGAGGCAGCGATCAAAACAGAAACGCTATGAGGAGGAAATGCAGCGAGAGCGGAGATTACTGCTAGAGGAGGAGAAACGCCTAGAGAACCCAGAGCTGTACCTGGAGCAATTGCATGCTAAATACAAAGATCTATCAGAAAAGGTTGACCAACGAAAAAGACTCAAGACAAATGGAAACCACACAAATGGAAATAATTTGTCAGGTGGTGTTGGTCGTGGGGAGAGGCTAAATGCTGCTCATAGGGAAAGGATGCGCCTGTTGACAACTGCAGCCTTTGATCGTGGTAAAGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGCAACTTTACAAATTGATGAGTAAGGACAATGACGATGACGATGAGGGACCAGACGAGGATGAGACAGAATTGGCCCACATCTCTTCTAGGCTCCAGGATTTGGATCCTACATTTGTACCCAAGTCGGAAACAGGTAATGCGCAATCTGCTGAGGTGGTGCAACGTATTCGACCTCTCACCAAAGAGGATTTTCAGATTGTTCTTGGGGTCGAAAGATTCAGATGCCCTGAGATTTTGTTCAATCCAAACTGGATCGGGGTTGATCAGGTAGGATTAGACGAGATGGCCGGGATCTCCATAAGGAGGTTGCCGGATAAAAATGAAAGCTTGGAAGAGAGACTAACTGATTCGATACTTGTGACTGGTGGAAGTTCTCTGTTTCCTGGTATGATTGAACGCCTTGAAGCTGGGATTAGGATGATCAGGCCCTGCGGATCACCCATAAAAATAGTTAGAGCATTGGACCCAGTTTTGGATGCATGGAGAGGGGCTTCTGCTTATGCATCAGCTTCACTGTTTCATACACAAACTTTCGGTAGGTCGGATTATTATGAGAAGGGTGAAGATTGGCTTCGCAGTTATCAGCTTCAGTATACATTGTAG 2643 0.4419 MAGSGIRQLLWVIWIPKSRRHTRRGGVEEFLGTLSWEVFYCDNVKCCMSSYTGKSSRSARLRSSSSSLDAEIHSVASSSRQCLSSRKFNVNLITISSVPPLRSSLTMAHHIFVSGETEPRVVFRNIVQRPRHKVTGMSLTPRCFLRHLDLPTAYVLVCVWKKSWKSFGRAIVVLSLFSFSETVTIVGDHNPALMKYFDCTRSGPRSAFDSNVVYQFEIMEYVSFLLITLFMNKGGILVLACRLDACYVKLPLNPIIIHPVVFHFCIVMCKWLREQIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQHHGVCNKDGLAMCPGFTTTHVIPFVDGEPAYKGCCRTNIGGFHVTDYLKQLLSIKYPYHLARFTWEKVENLKMEHGYIAQTYASEARLFQRGGKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSRINELENELHGLDFLLQQLEQVEESDIPSFLSDTGYVSKQEVESARVKVTQSLRKAKGEPKSEQAETEKADSGNNEKYSLINIPDETLTPEQKKQLSLKSMSEGRQRSKQKRYEEEMQRERRLLLEEEKRLENPELYLEQLHAKYKDLSEKVDQRKRLKTNGNHTNGNNLSGGVGRGERLNAAHRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDNDDDDEGPDEDETELAHISSRLQDLDPTFVPKSETGNAQSAEVVQRIRPLTKEDFQIVLGVERFRCPEILFNPNWIGVDQVGLDEMAGISIRRLPDKNESLEERLTDSILVTGGSSLFPGMIERLEAGIRMIRPCGSPIKIVRALDPVLDAWRGASAYASASLFHTQTFGRSDYYEKGEDWLRSYQLQYTL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1263 880 SMART actin_3 113 876 IPR004000 -
Lele26g1263 880 MobiDBLite consensus disorder prediction 566 584 - -
Lele26g1263 880 MobiDBLite consensus disorder prediction 708 729 - -
Lele26g1263 880 MobiDBLite consensus disorder prediction 542 565 - -
Lele26g1263 880 FunFam actin-related protein 5 313 367 - -
Lele26g1263 880 MobiDBLite consensus disorder prediction 519 541 - -
Lele26g1263 880 Gene3D - 770 839 - -
Lele26g1263 880 PANTHER ACTIN 263 868 IPR004000 -
Lele26g1263 880 Gene3D - 840 868 - -
Lele26g1263 880 SUPERFAMILY Actin-like ATPase domain 113 320 IPR043129 -
Lele26g1263 880 FunFam Actin-related protein 5 740 769 - -
Lele26g1263 880 FunFam Putative actin-related protein 5 840 868 - -
Lele26g1263 880 Gene3D Actin; Chain A, domain 4 368 421 - -
Lele26g1263 880 Gene3D Actin; Chain A, domain 4 699 769 - -
Lele26g1263 880 CDD NBD_sugar-kinase_HSP70_actin 277 363 - -
Lele26g1263 880 Gene3D - 313 367 - -
Lele26g1263 880 Coils Coil 470 490 - -
Lele26g1263 880 FunFam ARP5 actin-related protein 5 homolog 770 839 - -
Lele26g1263 880 Pfam Actin 275 429 IPR004000 -
Lele26g1263 880 Pfam Actin 745 872 IPR004000 -
Lele26g1263 880 Gene3D - 275 311 - -
Lele26g1263 880 MobiDBLite consensus disorder prediction 519 584 - -
Lele26g1263 880 SUPERFAMILY Actin-like ATPase domain 331 873 IPR043129 -
Lele26g1263 880 Coils Coil 606 626 - -
Lele26g1263 880 Coils Coil 578 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1263 Lele-ChrLele26 8305379 8313664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1263 746 867 Cytoskeleton Gene Families AT5G09810 35.246 6.28e-17 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1251 25 8355772 8361176 Lele26g1263 26 8305379 8313664 CCT
Lele26g1263 26 8305379 8313664 Lele26g1263 26 8305379 8313664 ECH
Lele26g1263 26 8305379 8313664 Lele27g0832 27 16354282 16359775 hybridization
Lele26g1263 26 8305379 8313664 Lele28g1255 28 8342269 8347783 hybridization