Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1260 ATGGAAAAAGAGGTCACAGACTTCATAGTTGGTGGTGGATTCAGGTGTAACAAACGTTTGCATGAAAATCCCATAGTTACAAATGGGAAATTGCTAAGGGGGTTATTGTATAACCTGTTCCAGTTAACTAGTGGAGTCTCAATTCACTTTTCCCAAGCACATAGAGCCATGAGTTTTGTTTTGAGAGGAACAAGAGCAGACGTAGAAACCGGATATCCTGGATTTATTCCTGAGAGGCATGCATTGCGTGTTCATGCAGCACGGCCTACTAATTCCAATTCACTTACTTTTCTTGTTACAGTTCTCCTGCTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGCTAGTGCTAGGTGTCTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAGCTTCAAGCTGAGGCTCATGCCCATACAGCAGCAGGCAGTGGTGGCCTTCTTGGGCACACTGAAGTACGGTTACATATGCCGCCATCAATGGCACTTACCACCCGAGGACGTCTGCAAGGCCTTAGACTTCAGCTTGCCCTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCACTGGATTCAGATAATGCTCCACCTGCACCTTCTATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGGTTCTGGTCTCCAAAACAGGAAATCCTCAATGCAACAGACCTCATCTTCCACCTTTGCTGAGAAGAAGCAAGATACGTCAAATGCAGCTGGTAGTACAAAAGCCTCAGATGATGAGCTGACCTGCAGCGTGTGTTTGGAGCAAGTTAACGTTGGGGATCTACTCCGTAGCTTGCCCTGCTTACATCAGTTTCATGCCAATTGCATCGACCCATGGCTGCGGCAACAAGGAACATGTCCTGTATGTAAATTCAGAGCAGGATCTACGTGGCATGAAAGTGAACAGAATGAAGTTGATGCTTCAGACATGGTTTGA 999 0.4474 MEKEVTDFIVGGGFRCNKRLHENPIVTNGKLLRGLLYNLFQLTSGVSIHFSQAHRAMSFVLRGTRADVETGYPGFIPERHALRVHAARPTNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAEAHAHTAAGSGGLLGHTEVRLHMPPSMALTTRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQNRKSSMQQTSSSTFAEKKQDTSNAAGSTKASDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSTWHESEQNEVDASDMV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1260 332 MobiDBLite consensus disorder prediction 231 262 - -
Lele26g1260 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 315 IPR013083 -
Lele26g1260 332 MobiDBLite consensus disorder prediction 230 262 - -
Lele26g1260 332 CDD RING-H2_PA-TM-RING 269 311 - -
Lele26g1260 332 PANTHER TARGET OF ERK KINASE MPK-1 58 316 - -
Lele26g1260 332 SMART ring_2 270 310 IPR001841 -
Lele26g1260 332 SUPERFAMILY RING/U-box 264 314 - -
Lele26g1260 332 Pfam Ring finger domain 269 311 IPR001841 -
Lele26g1260 332 ProSiteProfiles Zinc finger RING-type profile. 270 311 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1260 Lele-ChrLele26 8249147 8252341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1260 57 332 C3H Transcription Factor Family AT3G55530 72.924 2.77e-136 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1246 25 8293914 8300503 Lele26g1260 26 8249147 8252341 ECH
Lele26g1260 26 8249147 8252341 Lele26g1260 26 8249147 8252341 ECH
Lele26g1260 26 8249147 8252341 Lele27g0836 27 16416772 16419818 hybridization
Lele26g1260 26 8249147 8252341 Lele28g1252 28 8278525 8282229 hybridization