Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1259 ATGGCCACGGGGACATCTTCTTATTGGTGTTACAGATGCTGTCGGTTTGTGAGGGTTCGGCGGCAGGACACGGTGGTGTGTCCCGACTGCGACAGTGGATTCGTGGAGGAGATTGAGCAAATGCCTCGCCCTGCTTCTATCGTGGATTCGCGCCGGCCAAGGTTCCCGGCGGCTTCGATGTACATGATCCGTGGCCACCAACCCCATTCTGGACAGACTCTGCGTCCTGCTTTGAGGAGGGCTCGTCGGACCGGCGGCGGCGATCTTTCTATGGTTAATCCGGTTGTTGTGCTCCGTGGATCACCTCAGCCGGTGAGTCATGATTCCGGCGGTGGACATGGGCGTGGTTTCGAGCTTTATTACCAAGATGGGTCAGGCTCCGGTCTCCGGCCTCTTCCTCCGAACATGTCAGAGATGCTTCTGGGATCTGGAATCGACAGGCTTCTGGAACAACTTTCTCAGATTGAAATGAACGGTATTTCGCGTTTCGAGCCACCTCCGGTTTCTAAAGCCGCCATCGATTCATTGCCGACGGTCGAGATTCATGTTAATCATGTTGCGACGGGATCACACTGCGCCGTTTGCATGGAGATTTTTTATTTGGGCACAACTGCTCGTGAATTGCCTTGCAGGCACATTTACCATTCGGAATGCATCTTGCCGTGGCTTGCGATCCGGAATACTTGCCCTGTTTGCCGGCTGGAGCTCCCGGCAGACAATCAGAACGTCAACGGTCCTGGTTCTGGGCATTCTCTCTCTTTGAACGACGATGACAATGTGGGATTGACCATTTGGAGGCTTCCTGGAGGTGGCTTCGCGGTGGGAAGGTTCGCTGGCGGGAGAAGAAGTTCTTCTGAGCATGAGCTTCCTGTTGTGTACACAGAAATGGACGGTGGTCTTGGAAACGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGACGGGCAGTCGAGGAAGAGACAGTGGAGGTGGAGGAGGATTCCGCAAAATGTTTCGCAATCTTTTCGGTTGCTTCACTCCTGGAACTCGAACTCAATTCTCTGCTTCAACTTCATCTTCTTCTTCTCCTCCCCCTCCAGAACCTCGTACCTTCAGGAGTAATAATGCTTCTCGCTCTCGTCCCGTCGTGAATAATACCACAACGCGTTACCGAAGAACCTGGTCTCTGGACGGCAATGGCGGTACCAGACCATGGTGA 1200 0.5425 MATGTSSYWCYRCCRFVRVRRQDTVVCPDCDSGFVEEIEQMPRPASIVDSRRPRFPAASMYMIRGHQPHSGQTLRPALRRARRTGGGDLSMVNPVVVLRGSPQPVSHDSGGGHGRGFELYYQDGSGSGLRPLPPNMSEMLLGSGIDRLLEQLSQIEMNGISRFEPPPVSKAAIDSLPTVEIHVNHVATGSHCAVCMEIFYLGTTARELPCRHIYHSECILPWLAIRNTCPVCRLELPADNQNVNGPGSGHSLSLNDDDNVGLTIWRLPGGGFAVGRFAGGRRSSSEHELPVVYTEMDGGLGNGGEPRRVTWSTTTGSRGRDSGGGGGFRKMFRNLFGCFTPGTRTQFSASTSSSSSPPPPEPRTFRSNNASRSRPVVNNTTTRYRRTWSLDGNGGTRPW 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1259 399 MobiDBLite consensus disorder prediction 295 327 - -
Lele26g1259 399 Pfam Protein of unknown function (DUF1117) 260 356 IPR010543 -
Lele26g1259 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 237 - -
Lele26g1259 399 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Lele26g1259 399 SUPERFAMILY RING/U-box 172 239 - -
Lele26g1259 399 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Lele26g1259 399 Pfam Ring finger domain 191 233 IPR001841 -
Lele26g1259 399 FunFam E3 ubiquitin-protein ligase RING1-like 154 239 - -
Lele26g1259 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Lele26g1259 399 MobiDBLite consensus disorder prediction 343 399 - -
Lele26g1259 399 MobiDBLite consensus disorder prediction 365 389 - -
Lele26g1259 399 SMART ring_2 192 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1259 Lele-ChrLele26 8243190 8244389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1259 131 242 C3H Transcription Factor Family AT5G01980 43.750 1.54e-25 106