Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1231 ATGAAGAAGCAGTCTTCTGTTTATATTAATACAGTTTTCTGGAAAAGCAAGAGGAATATCACAATGAAGGCCCTGATTCTGGTTGGAGGCTTTGGAACAAGACTGAGGCCATTGACACTCAGTGTCCCCAAACCTCTTGTAGATTTTGCTAACAAACCCATGATCCTGCATCAGATAGAGGCTCTTAAGTCTATTGGAGTTAATGAAGTGGTATTAGCCATCAATTACCAACCAGAGGTGATGTTGAACTTCTTGAAGGAATACGAGGCAAAGCTAGGCATCAAGATCACGTGCTCGCAAGAAACTGAACCACTGGGTACAGCAGGTCCTCTGGCTCTTGCCAGGGACAAGCTGATAGATGGCTCTGGAGATCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAAGGAGATGGTTCAATTCCATAAATCCCATGGAGGAGAGGCATCCATAATGGTTACAAAGGTTGATGAGCCATCGAAGTATGGTGTGGTTGTCATGGAGGAGGCCACAGGGAAGGTTGAGAAATTTGTCGAAAAGCCTAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATTTACTTATTGAATCCCTCAGTTCTGGATCGCATTGAGCTAAGGCCCACATCTATCGAGAAAGAGGTGTTTCCAAAGATTGCATCAGAGCAAAAGCTATTTGCAATGGTCCTTCCTGGGTTTTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGTCTGAGACTCTACCTGGATTCACTGAAGAAAAAATCTTCTTCCAAGTTATCCACTGGTCCTCATATTGTGGGGAATGTCATAGTGGACGAGACTGCCAAAATTGGCGAAGGATGTCTTATTGGACCTGATGTTGCTATTGGTCCCGGCTGCATAGTCGAGTCAGGCGTTCGTCTCTCACGCTGCACTGTTATGCGAGGAGTTCGAATTAAGAAACATGCCTGCATTTCCAGCAGCATTATTGGCTGGCATTCCACAGTGGGGCAATGGGCTCGTGTGGAGAACATGACTATTCTCGGAGAAGATGTCCATGTTTGTGATGAGATATACAGCAACGGTGGTGTAGTTCTGCCCCACAAGGAGATCAAGTCCAGCATTTGGAAACCTGAGATAGTCATGTGA 1149 0.4473 MKKQSSVYINTVFWKSKRNITMKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKSIGVNEVVLAINYQPEVMLNFLKEYEAKLGIKITCSQETEPLGTAGPLALARDKLIDGSGDPFFVLNSDVISEYPLKEMVQFHKSHGGEASIMVTKVDEPSKYGVVVMEEATGKVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIASEQKLFAMVLPGFWMDIGQPRDYISGLRLYLDSLKKKSSSKLSTGPHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIWKPEIVM 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1231 382 CDD M1P_guanylylT_B_like_N 22 255 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lele26g1231 382 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 21 254 IPR029044 -
Lele26g1231 382 Gene3D Hexapeptide repeat proteins 256 376 - -
Lele26g1231 382 FunFam mannose-1-phosphate guanyltransferase beta 22 253 - -
Lele26g1231 382 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 22 381 - -
Lele26g1231 382 Pfam Bacterial transferase hexapeptide (six repeats) 282 316 IPR001451 -
Lele26g1231 382 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 333 IPR029044 -
Lele26g1231 382 Pfam Nucleotidyl transferase 23 250 IPR005835 GO:0009058|GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1231 Lele-ChrLele26 8038920 8041368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1231 22 168 Eukaryotic Initiation Factors Gene Family AT4G18300 24.516 1.79e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1215 25 8060525 8063296 Lele26g1231 26 8038920 8041368 CCT
Lele26g1231 26 8038920 8041368 Lele25g1213 25 8048935 8056093 CCT
Lele26g1231 26 8038920 8041368 Lele26g1229 26 8025783 8034998 CCT
Lele26g1231 26 8038920 8041368 Lele27g0865 27 16671551 16675439 CCT
Lele26g1231 26 8038920 8041368 Lele28g1222 28 8035421 8040302 CCT
Lele26g1231 26 8038920 8041368 Lele26g1231 26 8038920 8041368 ECH
Lele26g1231 26 8038920 8041368 Lele27g0862 27 16659890 16662680 hybridization
Lele26g1231 26 8038920 8041368 Lele28g1224 28 8049182 8052679 hybridization