Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1227 ATGTATAGGGAGCAAGAGCTTGTGAATGATGAAACATGTATGATGATTGGGGTTATAGTGCTACCTACAAGATTTCTATGGAAGGGTGGCAAAGAAGGTGAGATTGTGATAAAGTGGGTGGTAGATTTTGGGGATCCGTCAATGGCGTTGCTGGCGGCCTGTGGAGGTGATACAGTGAAGTTGTTCGATGCCTCGGTCAAGCCCGGCGATCCTTGCTCATTGAGCTATACCCCTTCTCCTGGATTTCAAGTAAATTCAGTGAAGTGGAACCATACCAATTTGGTTGTGGCCAGTGCTGGAGATGATAAGAAGATCTCGTTGTGGCATAAAAATGGGCAGAGCATGGGTACCATTCCCGTAGCTGGGACTGATAGTGGAGACAACATAGAGGAGTCTATAATGGCTATCAGCTTCAGTAACAGGGCTTCCAGATATCTATGCTCTGGAGGAAGTGGTCAAGTTGTAAGGATATGGGATTTGCAAAGGAAGCGCTGTATTAAATGGTTGAGAGGTCATACTAGCACTATTACAGGTGTAATGTACAACTGCAAAGATGAACACTTGGCTTCTATCAGCCTTAGTGGGGGCCTTATACTTCATAACCTTGCTTCTGGTGCAAGGGCTGCCGAACTCAAAGACCCCAACGAACAGGTGTTGAGAGTTCTTGACTATTCCCGAATTAGTCGTCACCTTTTGGTGACAGCTGGTGATGATGGTACTGTTCATCTGTGGGATACAACCGGTCGGAGCCCTAAGGTTTCGTGGTTGAAGCAACATTCTGCCCCGACCGCTGGTATTAGCTTCTCTCCATCCAATGACAAGATAATTGCTAGCGTGGGCCTTGACAAAAAATTATATACTTATGACACTGGTTCTAGAAGACCATCATCTTGTATATCTTATGAGGCACCATTCTCTTCATTGGCCTTTAGGGATGATGGATGGATGCTGGCAGCTGCAACAAGCAATGGTAGGGTTGCTTTCTATGATGTTCGTGGAAAACCACAACCTTTTGTCGTTCTTCATGCTTATGGTAGCTCCGAGGCTGTTACAGGCTTATGCTGGCAGAGGTCAAAACCTGTAAGTGTCAATGAAGCTAATTGCACTGCTGAGACTGCACTTGTGGGAGATGCAGTTGAAGATTCCATCCTTATGCCAGATCCTTTACCTTCTGGAACCTCATCCAGTGTTTCTCTATCTACTGTAGTGTCAAGTTCTAGGAATACTGGTCGTCTAAATGCCTCCATTGAAGTATCTTCACTTAAATCATCTACCAGTGGATTGACATCAAGCATGCTAAATGTGTCTAGTGGAGAGGAAACACCATATCGAAGCCATCTATGGCCAGGTGGAAATCTCTCAAGGCTAAATGCTCCACGTTCTAGTTATAACTTCAAAGATGACATGGAGGTTTTCTCCCCTCTTGTGGATGTTCAACCAATAACACCCTCGCTATGGGATGAAAATGGAGCAAAGAAGGATAACATATTTGCAGATAGGAAACCTTCATCACTGTTGTTTCCTTCATCTAGTAGGAGATTTCCGAATACAGAGGAGGGCAGCACTGATCATCCAATATTTGATTGGAAATCTGGCTCAATTTCCAAGCAGGATGAAACTCGATCTTCATTTCCACCTGTGGAATCAGTTGCTCCCCCATCTTCCAAGGATGAAGCTTCTTCAATCACTCCTCCAGAAGCTTGGGGTGGTGAGAGGTTATCCGAAAAATATACCTACCTTCGTCAATCCATCAATGCACCTTCTCGTTTTGGGACATTGGCTTCTGGTGTTCAGACAGCAGGATCTATGTCTTCTGGATTGCAGGCTTTCCCATCGTCAGATGTTACTTCTCTTGCAACTTCGAGCGTCGATTTTGCCAATTTACGCAGCAAAGATGTGTCTACTAGTCAGGAGACTTCATTAGGTTTTCCTGATCCCTTGGCTTCTACCTCCTTGTCTATCAATACAAAATCCATTCTCGGACAGGTTAGCCTGGATTCCCCACGAATGTCATCTTTGACCCGACGATTTTCCACTTATGCGGAGAGAATAAGCACTACCTCTACCTTCAGTGATGGAGTATCTCTTTCAGTAGGATCACCTAAGATGAAAAAATCTGGAGCAGAAACCAGAGAAGAACTTCTAAATAGCTTGCTGCTGAAGTCTGATACATCAGTTTCAACAGAATCAAGCTCTATATTACCTGCAAATGGTGTAAACGCACAACAACCAAAAGCATCTCAGTTAGATGCACAGCAAGGTTCCTCATTTACACTTCAGCTTTTTCAACGAACCTTGGAAGAAACTTTAGATTCGCGTCTGAAACCCATTCATGAGGATATGAGGAACCTTCATATTGAAATGTTAAGACAGTTTCATCTGCAGGAGACGGAAATGTTTGGCGTGATGAAATCCATTATGGAGAACCAAGCTGAGTTGATGAAGGAAGTGAAGTCTCTTCGTCAGGAATTTCAGCAGCTCCGGCAAATGCTTTGA 2496 0.4419 MYREQELVNDETCMMIGVIVLPTRFLWKGGKEGEIVIKWVVDFGDPSMALLAACGGDTVKLFDASVKPGDPCSLSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWHKNGQSMGTIPVAGTDSGDNIEESIMAISFSNRASRYLCSGGSGQVVRIWDLQRKRCIKWLRGHTSTITGVMYNCKDEHLASISLSGGLILHNLASGARAAELKDPNEQVLRVLDYSRISRHLLVTAGDDGTVHLWDTTGRSPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDTGSRRPSSCISYEAPFSSLAFRDDGWMLAAATSNGRVAFYDVRGKPQPFVVLHAYGSSEAVTGLCWQRSKPVSVNEANCTAETALVGDAVEDSILMPDPLPSGTSSSVSLSTVVSSSRNTGRLNASIEVSSLKSSTSGLTSSMLNVSSGEETPYRSHLWPGGNLSRLNAPRSSYNFKDDMEVFSPLVDVQPITPSLWDENGAKKDNIFADRKPSSLLFPSSSRRFPNTEEGSTDHPIFDWKSGSISKQDETRSSFPPVESVAPPSSKDEASSITPPEAWGGERLSEKYTYLRQSINAPSRFGTLASGVQTAGSMSSGLQAFPSSDVTSLATSSVDFANLRSKDVSTSQETSLGFPDPLASTSLSINTKSILGQVSLDSPRMSSLTRRFSTYAERISTTSTFSDGVSLSVGSPKMKKSGAETREELLNSLLLKSDTSVSTESSSILPANGVNAQQPKASQLDAQQGSSFTLQLFQRTLEETLDSRLKPIHEDMRNLHIEMLRQFHLQETEMFGVMKSIMENQAELMKEVKSLRQEFQQLRQML 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1227 831 SMART WD40_4 162 201 IPR001680 GO:0005515
Lele26g1227 831 SMART WD40_4 204 245 IPR001680 GO:0005515
Lele26g1227 831 SMART WD40_4 249 289 IPR001680 GO:0005515
Lele26g1227 831 SMART WD40_4 69 109 IPR001680 GO:0005515
Lele26g1227 831 SMART WD40_4 292 330 IPR001680 GO:0005515
Lele26g1227 831 SMART WD40_4 111 159 IPR001680 GO:0005515
Lele26g1227 831 Coils Coil 803 831 - -
Lele26g1227 831 MobiDBLite consensus disorder prediction 508 569 - -
Lele26g1227 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 245 IPR001680 GO:0005515
Lele26g1227 831 MobiDBLite consensus disorder prediction 536 561 - -
Lele26g1227 831 Gene3D - 210 382 IPR015943 GO:0005515
Lele26g1227 831 FunFam Protein NEDD1 44 218 - -
Lele26g1227 831 SUPERFAMILY WD40 repeat-like 54 356 IPR036322 GO:0005515
Lele26g1227 831 Gene3D - 29 208 IPR015943 GO:0005515
Lele26g1227 831 Pfam WD domain, G-beta repeat 230 245 IPR001680 GO:0005515
Lele26g1227 831 Pfam WD domain, G-beta repeat 82 108 IPR001680 GO:0005515
Lele26g1227 831 PANTHER PROTEIN NEDD1 43 831 IPR044621 GO:0010968|GO:0140496
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1227 Lele-ChrLele26 8009923 8017882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1227 132 331 Miscellaneous Gene Families AT5G08390 22.381 4.10e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1227 26 8009923 8017882 Lele27g0867 27 16684710 16698802 hybridization
Lele26g1227 26 8009923 8017882 Lele28g1220 28 8019702 8029316 hybridization