Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1226 ATGGCTCCTTCAGAAGTCAATCATCTCTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATACTCCGAGAGGAAGTCTGGATTTATGAAATGGATTAGTAAGCTTTTCAAAGGTGGGTCCAATCGAGGAAGGGGAGGTCGTCATCTCCATCAGCCTAGTGAGGAAAATTTGGTTTGGCGTAATCCAGCAAGATCCTTGGACGACCGTTCTAGGGCTCGGAAGGAGAAAGAGGATCTGGACAATGCAATTGCACTTTCTTTAGCTGATGATTTGAAAAGACCAAATCATCGTCAAGGATATAGATGGCGCGGAGACATTGATGAAGATTATGCGAGTGAATTTCAGGGCAACCAGAACTCGTCTGCACATCCTCCATATACCCGTGCAACATACGGGGAAATTAGGGTATGTGGTGGGTGCAAGCGGGAGATAGTCTATGGGAATTGTTTAAGATGCAATAATACTTTTTTCCATCCAGGGTGCTTTCGCTGTCATTCTTGTCGCTACCCCATTACTGAGCATGAGTTTTCTTTATCAGGGAAGCATCCGTATCACAAGTCCTGTTTCAAAGAGTTCACCCACCCAAAATGTGAAATTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCACCCATTTTGGTCCCAAAAATATTGTCCAGCTCATGAATATGACGATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGTCTTTGAATGCAAAATACTATAGTTTGGAAGATGGGCGAAGTTTATGTTTAGAGTGCATGGAGTCAGCTATTATGGACACGGGAGATTGTCAACCTCTTTACCATGCTATTAGAGATTATTATGAAGGAATGAACATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATTGTTGGGGATAAAAATGGTTACCATCACATGCCGGAGACAAGAGGCTTTTGCCTTTCTGAAGAGCTGACTGTCACCAGTATTCATCGAAGGCCAAGAATTGGAGGCCGCCGGCTAATCGGCATGAGAACCCAACTTCAAAAGCTAACTAGAAAATGTGAAGTTACGGCCATTCTTGTTCTCTACGGTCTTCCAAGGTTACTCACAGGCGCTATCCTCGCCCATGAGTTGATGCACGGCTGGTTACGCCTTAAAGGTTACCGTAATCTTAATCCTGAAGTAGAGGAAGGAATCTGTCAGGTTCTGTCTTATATGTGGCTTGAGTCAGAAGTGATGCCTGGCCTCAAAAGCATGCCTTCAACTTCAGCAGCTTCTTCCTCATCCTCTTCCTCTTCCTACTACTACTCATCATCATCATCATCTAAGAAAGGAGCCAAATCTGAAGTTGAAAATAAACTGGGTCAGTTTTTCATGAATCAGATAGCCAATGATTCTTCTCCAGCATATGGGGGTGGCTTTAGAGCTGCTAATGAGGCTGTGAACAAATATGGTTTACGTAGTACTCTTGAACATATTCGTTTGACTGGTAGTTTCCCACTGTAA 1530 0.432 MAPSEVNHLSHPCIYGDFASSYSERKSGFMKWISKLFKGGSNRGRGGRHLHQPSEENLVWRNPARSLDDRSRARKEKEDLDNAIALSLADDLKRPNHRQGYRWRGDIDEDYASEFQGNQNSSAHPPYTRATYGEIRVCGGCKREIVYGNCLRCNNTFFHPGCFRCHSCRYPITEHEFSLSGKHPYHKSCFKEFTHPKCEICFQFIPINAAGLIEYRCHPFWSQKYCPAHEYDDTARCCSCERLESLNAKYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNEAIVGDKNGYHHMPETRGFCLSEELTVTSIHRRPRIGGRRLIGMRTQLQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPGLKSMPSTSAASSSSSSSSYYYSSSSSSKKGAKSEVENKLGQFFMNQIANDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGSFPL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1226 509 Pfam Protein DA1 287 504 IPR022087 -
Lele26g1226 509 PANTHER PROTEIN DA1-RELATED 2 32 508 IPR045218 -
Lele26g1226 509 Gene3D Cysteine Rich Protein 130 205 - -
Lele26g1226 509 Pfam LIM domain 138 191 IPR001781 -
Lele26g1226 509 ProSiteProfiles LIM domain profile. 136 196 IPR001781 -
Lele26g1226 509 CDD LIM_DA1 138 190 - -
Lele26g1226 509 FunFam Protein DA1-related 2 126 191 - -
Lele26g1226 509 SMART lim_4 137 189 IPR001781 -
Lele26g1226 509 ProSitePatterns LIM zinc-binding domain signature. 138 172 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1226 Lele-ChrLele26 7995943 8000460 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele26g1226 DA1-like 1.4e-99 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1209 25 8020041 8024492 Lele26g1226 26 7995943 8000460 CCT
Lele26g1226 26 7995943 8000460 Lele26g1226 26 7995943 8000460 ECH
Lele26g1226 26 7995943 8000460 Lele27g0868 27 16707347 16711780 hybridization
Lele26g1226 26 7995943 8000460 Lele28g1219 28 8006275 8010721 hybridization