Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1184 ATGGCGGCGAGCGAGCGCACCGTGTTGCAGTTCTCTTCCTCTTCGCAGACCTTAACTGCGAAGGTTCACCCTCTTGTTGTCTTCAACATCTGTGACTGCTATGTCCGACGTCCGGACCAAGCGGAGCGCGTCATCGGAACACTCCTTGGCTCCGTCTTGCCCGATGGAACCGTCGATATCTGTAATTCTTATGCTGTTCCCCACAATGAGTCTCTAGGACAGGTTGCTCTGGATATTGAGTACCACCACAATATGTTGATTTCCCACCAAAAAGTGAACCCAAAGGAGATCATAGTTGGGTGGTATTCAACTGGTCTTGGAGTGAATGGGGGTAGTGCATTAATCCATGAATTTTATTCTCGTGAAGTGCCCAATCCTATACATTTGACAGTTGATACAGGATTCACAAATGGAGAGGGAACCATAAAAGCATATGTATCGCACAATTTATCTCTTGGAGATTGGCAAATTGCTGCTCAGTTTCAAGAAATTCCTCTGGATCTTCGCATGGTTGAAGCTGAGCGAGTTGGATTTGATACTCTGAAGGCAACCACTATTGACAAAATCCCAAATGATTTGGAAGGGATGGAAACATCGATGGAACGGCTACTAGCCTTGATTGTTGAGATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTATTGTGCCAGACAACAATGTCGGGAGGTTTATATCCAATGCTGTAGGTTCCCTTCCCAAATTGCCCCCTTCAGCTTTTGATAAGCTCGTGAATGATAGTTTGCAGGGCCATTTGCTCTTGCTCTATTTGTCAAGTATCACAAGGACACAGCTGAGCTTGGCCGAGAAATTGAACACAGCTGCTCAGATTCTGTGGTGGCGCATTGCTATTCCCAGAAAAAGAGAAGCAACAGATTTAAGGTTTTGTGGAGACGAGAAAGGGAACAAGACACGCATCTTCCGGAGCACAAGTCAGAGAAAGCTCAGACCTAAAGTTGATTGCTCAGAGGCATTATCTGTAAAATCTGGAAGTGAAGGATATGGAAGATGGCATGTCAGGGTATTGTATCCGAACAGGAAGTTTTCGGAGAGCACTGATCAGATTCAGAAGATCTCCACTGAGCTTAGCTATTATGGCAAGATTGAGAGCAAGAATGTGTTTTATTGGTTTCAGAACCATAAAGCCAGGGAAAGGCAGAAGCGTCGCAAGGTCTCATTTCACGACAAGGATTTCAGTAATAATAATAATATTCGTCGTCAAAACAACTCTCTGTTATCTTCCACACACAATTTTGGGGAGGTGGATCAAGTTCAAGAGCCAGAGAGAGTGATAGAGACTCTTCAACTGTTTCCATTGAACTCCATTGGGGAATCAGAAACAGAGAAACTGAGGGCACAAGCAAGTAAATATGGAGATAATAGTACGATGATGTTTCAGTTGTCACTAGGTGAACATATGGAGAACCCAGCATTAGATTTGAGCTTAAGCTTTCTGTAA 1479 0.4402 MAASERTVLQFSSSSQTLTAKVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDICNSYAVPHNESLGQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVNGGSALIHEFYSREVPNPIHLTVDTGFTNGEGTIKAYVSHNLSLGDWQIAAQFQEIPLDLRMVEAERVGFDTLKATTIDKIPNDLEGMETSMERLLALIVEIYKYVDDVVEGRIVPDNNVGRFISNAVGSLPKLPPSAFDKLVNDSLQGHLLLLYLSSITRTQLSLAEKLNTAAQILWWRIAIPRKREATDLRFCGDEKGNKTRIFRSTSQRKLRPKVDCSEALSVKSGSEGYGRWHVRVLYPNRKFSESTDQIQKISTELSYYGKIESKNVFYWFQNHKARERQKRRKVSFHDKDFSNNNNIRRQNNSLLSSTHNFGEVDQVQEPERVIETLQLFPLNSIGESETEKLRAQASKYGDNSTMMFQLSLGEHMENPALDLSLSFL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1184 492 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Lele26g1184 492 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele26g1184 492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 297 - -
Lele26g1184 492 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele26g1184 492 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele26g1184 492 SUPERFAMILY Homeodomain-like 358 396 IPR009057 -
Lele26g1184 492 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Lele26g1184 492 Pfam Homeodomain 358 393 IPR001356 GO:0003677
Lele26g1184 492 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 17 122 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele26g1184 492 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Lele26g1184 492 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1184 Lele-ChrLele26 7690216 7701508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1184 2 285 Eukaryotic Initiation Factors Gene Family AT2G39990 77.663 3.05e-158 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele26g1184 MitMem_reg 3.8e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1182 25 7763149 7763810 Lele26g1184 26 7690216 7701508 CCT
Lele26g1184 26 7690216 7701508 Lele25g1189 25 7828932 7830659 CCT
Lele26g1184 26 7690216 7701508 Lele26g1196 26 7782278 7786532 CCT
Lele26g1184 26 7690216 7701508 Lele27g0888 27 16880523 16882225 CCT
Lele26g1184 26 7690216 7701508 Lele28g1188 28 7752864 7758577 CCT
Lele25g1182 25 7763149 7763810 Lele26g1184 26 7690216 7701508 ECH
Lele26g1184 26 7690216 7701508 Lele26g1184 26 7690216 7701508 ECH
Lele26g1184 26 7690216 7701508 Lele27g0898 27 16958221 16958888 hybridization
Lele26g1184 26 7690216 7701508 Lele28g1177 28 7677047 7677707 hybridization