Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1153 ATGCCTACGCCGGTCGGAGCAGCCAAGCAATGCTTGACTCCGGATGCAGCTCGCGCTCTCGATGAAGCTGTCTCCGTCGCCCGCCGTCGGGGGCACCCCCAGACCACCTCGCTACATGCTGTCTCCGCCTTGCTTTCGTTGCCGTCGTCTACCTTACGTGACGCCTGTGCTCGTGCCCGTAACTGTGCCTACTCGCCTCGGCTTCAATTCAAGGCGTTAGAGCTGTGCCTGAGCGTATCGCTAGACCGTGTCCCCTCGACTCAACTTGCCGATGACCCGCCAGTCTCTAACTCGCTCATGGCCGCCATCAAGCGCTCCCAGGCGAGTCAGAGAAGGCAGCCTGAGAATTTCAACATTTACCATCAAATATCGCAGCAGCCTACTTCGGTTTCTTGTGTGAAAGTTGAGCTTCAACATTTGCTATTATCGATTCTCGACGACCCGGTCGTGAGCCGGGTGTTCGGAGAAGCGGGTTTTCGAAGCCCCGAAATTAAACTTGCTATTGTTCGTCCTCTTCCACAGTTACTCAGGTACTGTCGCTCCAGAGTCCCCCCTATATTCCTCTGCAATTTGACGGAGCATCCGGACCCTGGTCGTCGGAGCTTCAGTTTCCCGTTTCCTGGGTCTTTCGGAACCTGCGACGGCGGCGCTGAGAATTACAAAAGAATCGGACATGTGCTTTGCAGGAGCAGAGGGAAGAATCCCCTGCTCCTGGGTGTATGCGCAGATGATGCTCTGTGTAGTTTCACAGAAGATGTTAATAAACAAAGAGACGGTGCTTTGCCGGTGGAGTTATCTGGATTGCGTGTTATGTGCATAGGAAAAGATATTTCCAAGTTTGTCTTTGAGAATTGCGATAACGAGACATTCAATTCAAAGCTTAAGGAGATTGCTCAAACGGCAGAGCAGGGAGTAGGACCTGGTTTGGTGCTGAATTTTGGGGACTTGAAGCCTTTGATTGATGAGAATGCCTCAAATGAAGCAGTGAATTATATTGTTGCTGAATTGGCTAAGTTGTTGGAGCTTAATTATGGCAAGTTTTGGTTGATGGGAGCTGCGGCGAGCTATGAGTGCTATCTGAAATTTATGGGAAGGTTTCCATCCATTGAGAAGGATTGGGACTTGCAGCTTCTGCCCATCACGTCTACTCGGCCTCAGGATGAATCGTGTCAGAGGCCTAGATACAGCTTAATGGATTCATTTGTCCCATTTGGTGGCTTGTTTTCTTCACCTTCTGATTTGAAAGGTGGCTCATATTATTGTGTTCCCCGTTGCCTTCATTGTGGTGAAAGTTGTGTGCAAGAAGTGCTTCCAGCTTCAAATGAGAGGCTGTCTGCTTCGGTGGCTGATCCTTACCAATCTAATTTACCTCCATGGTTGTGGACGGACCTTGGCATAAAAAAAAGGTTGAATGATAAGACAAAAGAAGATGGTGTTCGGCTGGATACTAGTGAATCTGGGCCTAACGAGAAATTGGATGAGACATGTCAGCATCTGCATAATACTCAGCAATTCTCTGAAGCGATTCCTTGTCAAACTGCCATGAGTCCCCGATGCTCTGATGGTAAAAAGGAAGATATTGACAATCGCACCAACAAAATTTCAGATGCATCACCTAGTATGCACATCGATCTCAATTCAAGTGCGCCCATTGCAGAAGAGATGATTTCTACATCATATTCAAGTATTCCTGTTCCTGTGGTTTCCAAAGCAAATCAGGAGAAACATATTTCTAAAGCCTTAGAGATGTTCCAGAAAGCAAAAGATCTTGAGTCAGGTGACCTAAGATCATGCAACATGTCCAATTCAAGCATGTGCGATGGTAGCCAATTGTCTCCCTCATCTGTGACTTCTGTAACCACAGATCCAGGTATAGGAATTTGCTTTTCTCCTACAAGCAAGAAATCTGAGAAACCAACTATGAGGGGTCCAAAGGAAATTGCGAGTCCCCTCTCTTCAAACTATAATTTAGTTAACAGGGATGTCTTTAAGCATCCAGCCCAGTCTTCATCCTGCTTAAGTTCTGACCATTCTGGACAATATGATCTAAGAAATCCTAAAATTCTTTTTGAAGCTCTTGCCAAAAAGGTTACCTGGCAGGATGAAGCCTTACAAAGCATTGTGAAAACAATATCTTACTGTGAAACAAGCAGGGGCAAATGCCAAGGAGCAAGTCGACGAGGGGGCATATGGATGAATTTTGTAGGAACTGATAGGTTTGGTAAGAAGAAAATTGCTGTTTCTCTGGCTGAGATTTTGTATGGAAGTCAGGAAAGCTTCCTTTTTGTGGATCTAAATCGTGAGGAAATAAATGGACGTGATGTGAAATTTAGAGGAAAGACTATTCTTGATGTTTTAGTTGGGGAGTTGTGCAAAAATCCATTGTCTGTGGTTTTACTTGACAATGTAGACATGGCTGATATGATGGTTCAGAATAGTTTATCTCAAGCTATCAAGAATGGAAAAATTATAGACTCGTGTGGAAGAGAAGTTGGTGTAAACAATACAATAATTGTGACATCTTTCTCAGTTCAAGAAGATAATTGGAATCGCACACTAAAGACAGAATTCTCCGGCTATTCTGAGGAAAGTGTATCAAGGACAAAAGGGGTACCAATCATGATAAAAGTTGAACATGTAATTGGAGACATCAGAAGTCCAAGCGTTGCTGTACTTAAATGTTCAACAGAGGGCGTTCCTGATCCAATCCTTGTAAATAAAAGAAAGCTGAGTTGTGACAATGCCCTTAATGGTCAGCACAAAACCTCAGAAATGGCTAAAAGGGCTCACAAAATTTCAAATTGTTTTCTAGATTTGAACGTCCCGGCAGAAGAGAATGAACTGCAATTCATGGATGATGGAAACCCTGAAGGTGTCTCAACTGCAACACAAAACCCCTGGCTGCAAGAATTGTATAATCAGGTTGATGAAACAATCATCTTGAAACCATACAATTTTGATGCACTTGCAGATAGAGTGTTAGAAATCATCAGAAGGATCTTCCACAAGATTCTCGGATCCGAGTGCTCACTACAGATAGAGTCAGAAGTCATGGAACAGTTACTTGCAGCTGCATATGTCTCAGAAGGGGACATGGCAGTGGAGGATTGGGTGGAGCAAGTTCTTAGTGGAGGATTTACAGAGATACAGAGAAGGTACAGCCTCTCTGCTCATTCTATCGTGAAACTTGCTACATATCAGGAGCAAGCTCCTGGTGTGTACCTTCTTCCCCCAAGGATAATCATAGACTGA 3252 0.4471 MPTPVGAAKQCLTPDAARALDEAVSVARRRGHPQTTSLHAVSALLSLPSSTLRDACARARNCAYSPRLQFKALELCLSVSLDRVPSTQLADDPPVSNSLMAAIKRSQASQRRQPENFNIYHQISQQPTSVSCVKVELQHLLLSILDDPVVSRVFGEAGFRSPEIKLAIVRPLPQLLRYCRSRVPPIFLCNLTEHPDPGRRSFSFPFPGSFGTCDGGAENYKRIGHVLCRSRGKNPLLLGVCADDALCSFTEDVNKQRDGALPVELSGLRVMCIGKDISKFVFENCDNETFNSKLKEIAQTAEQGVGPGLVLNFGDLKPLIDENASNEAVNYIVAELAKLLELNYGKFWLMGAAASYECYLKFMGRFPSIEKDWDLQLLPITSTRPQDESCQRPRYSLMDSFVPFGGLFSSPSDLKGGSYYCVPRCLHCGESCVQEVLPASNERLSASVADPYQSNLPPWLWTDLGIKKRLNDKTKEDGVRLDTSESGPNEKLDETCQHLHNTQQFSEAIPCQTAMSPRCSDGKKEDIDNRTNKISDASPSMHIDLNSSAPIAEEMISTSYSSIPVPVVSKANQEKHISKALEMFQKAKDLESGDLRSCNMSNSSMCDGSQLSPSSVTSVTTDPGIGICFSPTSKKSEKPTMRGPKEIASPLSSNYNLVNRDVFKHPAQSSSCLSSDHSGQYDLRNPKILFEALAKKVTWQDEALQSIVKTISYCETSRGKCQGASRRGGIWMNFVGTDRFGKKKIAVSLAEILYGSQESFLFVDLNREEINGRDVKFRGKTILDVLVGELCKNPLSVVLLDNVDMADMMVQNSLSQAIKNGKIIDSCGREVGVNNTIIVTSFSVQEDNWNRTLKTEFSGYSEESVSRTKGVPIMIKVEHVIGDIRSPSVAVLKCSTEGVPDPILVNKRKLSCDNALNGQHKTSEMAKRAHKISNCFLDLNVPAEENELQFMDDGNPEGVSTATQNPWLQELYNQVDETIILKPYNFDALADRVLEIIRRIFHKILGSECSLQIESEVMEQLLAAAYVSEGDMAVEDWVEQVLSGGFTEIQRRYSLSAHSIVKLATYQEQAPGVYLLPPRIIID 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1153 1083 SUPERFAMILY Double Clp-N motif 12 115 IPR036628 -
Lele26g1153 1083 Pfam Clp amino terminal domain, pathogenicity island component 135 168 IPR004176 -
Lele26g1153 1083 Pfam Clp amino terminal domain, pathogenicity island component 23 54 IPR004176 -
Lele26g1153 1083 MobiDBLite consensus disorder prediction 629 649 - -
Lele26g1153 1083 ProSiteProfiles Clp repeat (R) domain profile. 7 174 IPR004176 -
Lele26g1153 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 854 IPR027417 -
Lele26g1153 1083 CDD AAA 741 841 - -
Lele26g1153 1083 Gene3D - 660 882 IPR027417 -
Lele26g1153 1083 Gene3D - 10 171 IPR036628 -
Lele26g1153 1083 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1153 Lele-ChrLele26 7446381 7451113 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1154 25 7459199 7465760 Lele26g1153 26 7446381 7451113 CCT
Lele25g1142 25 7369286 7369816 Lele26g1153 26 7446381 7451113 CCT
Lele26g1153 26 7446381 7451113 Lele25g1170 25 7632686 7636571 CCT
Lele26g1153 26 7446381 7451113 Lele26g1169 26 7602383 7606402 CCT
Lele26g1153 26 7446381 7451113 Lele27g0909 27 17046302 17052013 CCT
Lele26g1153 26 7446381 7451113 Lele28g1162 28 7585376 7589397 CCT
Lele25g1154 25 7459199 7465760 Lele26g1153 26 7446381 7451113 ECH
Lele26g1153 26 7446381 7451113 Lele25g1154 25 7459199 7465760 ECH
Lele26g1153 26 7446381 7451113 Lele26g1153 26 7446381 7451113 ECH
Lele26g1153 26 7446381 7451113 Lele27g0927 27 17204610 17210856 ECH
Lele26g1153 26 7446381 7451113 Lele28g1146 28 7438307 7444097 ECH
Lele27g0927 27 17204610 17210856 Lele26g1153 26 7446381 7451113 ECH
Lele28g1146 28 7438307 7444097 Lele26g1153 26 7446381 7451113 ECH
Lele01g1219 01 7353530 7358347 Lele26g1153 26 7446381 7451113 ECH
Lele02g1489 02 19089372 19094181 Lele26g1153 26 7446381 7451113 ECH
Lele03g1232 03 7316094 7320925 Lele26g1153 26 7446381 7451113 ECH
Lele04g1474 04 19938523 19943327 Lele26g1153 26 7446381 7451113 ECH
Lele26g1153 26 7446381 7451113 Lele01g1219 01 7353530 7358347 ECH
Lele26g1153 26 7446381 7451113 Lele02g1489 02 19089372 19094181 ECH
Lele26g1153 26 7446381 7451113 Lele03g1232 03 7316094 7320925 ECH
Lele26g1153 26 7446381 7451113 Lele04g1474 04 19938523 19943327 ECH
Lele26g1153 26 7446381 7451113 Lele27g0927 27 17204610 17210856 hybridization
Lele26g1153 26 7446381 7451113 Lele28g1146 28 7438307 7444097 hybridization