Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1151 ATGGTGGAGGTGGGTTCCATATAACCAGCTACGAAGAACGAAAAAATCACACTTTCCTCTCTTCTTCATCGCTCGGGGCAGAGGCCAGAGAGGATAAAAGGGCAGAGGCTCCTCTCTTTCCTCCTCATTCTCTCAATCGAGCTCACAGAGGACTTCGATATGTGCGGTGTCTCAAAAACTAAACTTTCTCCCTCTAATAACGACGTGGATAGCGAGTTTCGGAAGCAGAATTGCGGTGTTCTCTGTAACATCTCAAGTCTGCTCGAGCTGTCTGCGTCGGATGATCTCGAAACTTTCATAAGGGAAGTAGAAGAGAAGGGTTCTGACTTGAACGAGGAAAGCTTTTGGTATGGAAGAAGAATTGGATCAAAGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTCGCTTCTTTATTTGGAAGCACCGAGGTGCTGAAGTATATTATTGAAACAGGCAGAGCTGATTTGAACAGGGCTTGTGGTTCCGATAAGGCCACGGCTCTCCATTGTGCTGTTGCCGGTGGCTCTGAATCCTCACTTCAGATTGTTAAGCTCTTGCTTGATGCAAAGGCAGATCCTGATTGCCTTGATGCTAGCGGAAATGAGCCTGTTAATTTGGTTGCTCCTGCCTTTAGTTCTTCATCTAACTTGCGAAGGAAGGCGATGGAGTCGTTGCTGAGAGGGGATGGATTAGGAGGACGAAGTCATCAAATTATCAAACAGGAGGCGGAACAACAGAAAGCGACAGCGCCTTTATCATCAAAAGAAGCAGCAGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACAATGGTATATATGGAACAGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCATGTTCAAGGGCATACTCTCATGACTGGACTGAGTGTCCATTTGTTCATCCCGGGGAGAATGCGAGGAGGAGGGATCCACGGAAGTATCCTTACAGCTGCGTTCCTTGCCCAGAGTTCCGCAAGGGAAGCTGCCCCAAGGGGGATGCCTGTGAGTATGCTCACGGTGTTTTCGAGTCATGGCTCCATCCTGCTCAATACCGAACAAGGCTTTGCAAGGACGAGACCGGTTGCTCACGGAAAGTCTGTTTCTTTGCTCACAAACCTGAAGAGTTGCGTCCCGTGTATGCTTCCACCGGTTCAGCAATGCCCTCACCAAAATCCTTTTCAGCTAGTGGGTTCGACACGACTGTTATGAGTCCATTAGCTCTGAGCTCTTCATCTTTGCCAATGTCAACTGTTTCAACACCGCCCTTGTCCCCTTTGGCTGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCTGCCTTCCTTGCAGCTCCCGGGTAGCCGGCTGAAGGCGGCCTTAAGTGCTAGGGATCTTGATTTGGAGATGGAACTGCTTGGGCTAGAAAGTCCAGCTAACCAGCAGCAGCAGCAGCAGTTGATAGAAGAGATAGCTCGAATCTCTTCCCCATCTTTCCGGAACAAAGAATATAGTAGGATAGGTGATTTGAAGCCAACTAACCTCGATGACCTTCTGGGATCTGTTGATCCTTCTGTTCTTTCTCAATTTCATGGACTTTCGGCACAATCTTCAGTACCTACTCAGCTGCAATCTCCCAATGGGCTTCAGATGCACCAAAACATGAACCACCTTCGTGCAAGCTATCCCACCAACCTTCCTTCCTCTCCGGCAAGAAATTCATTGGGCTTAGGGTTTGATTCATCGTTTGCTGTGGCAGCAGCAGTGATGAACTCCAGATCTGCAGCGTTTGCAAAGCGAAGTCAAAGTTTTATGGATCGCGGGGCGATGTCACCCCACCATTTTGGGCAATCTGCACCCTCTGACGGTGCCTGTAGGGTTTCTTCTGCACTTTCAGATTGGAGATCCCCTGATGGAAAACTGGATTGGGGTATGAATGGAGATGAGCTGAACAAGCTGAAGAAATCTGCTTCTTTCGGGTTCAGAAACAATGGAAACACTAACACCACCGTGGCACGGTCTGAAAATTTTGAGCCAGACGTATCGTGGGTTAATTCGTTGGTTAAAGATGTTCCCTCTGAGAAGCAGCAGCAGCAATTTGATCCCAGTAGAGAAATGCTTTCACCATGGGTGGAGCAGCTGTATAGAGAACACGAGCAGATAGTTGCATAA 2187 0.4792 MVEVGSIXPATKNEKITLSSLLHRSGQRPERIKGQRLLSFLLILSIELTEDFDMCGVSKTKLSPSNNDVDSEFRKQNCGVLCNISSLLELSASDDLETFIREVEEKGSDLNEESFWYGRRIGSKKMGLEKRTPLMVASLFGSTEVLKYIIETGRADLNRACGSDKATALHCAVAGGSESSLQIVKLLLDAKADPDCLDASGNEPVNLVAPAFSSSSNLRRKAMESLLRGDGLGGRSHQIIKQEAEQQKATAPLSSKEAAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASGFDTTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKSGSLWQNKINLTLPSLQLPGSRLKAALSARDLDLEMELLGLESPANQQQQQQLIEEIARISSPSFRNKEYSRIGDLKPTNLDDLLGSVDPSVLSQFHGLSAQSSVPTQLQSPNGLQMHQNMNHLRASYPTNLPSSPARNSLGLGFDSSFAVAAAVMNSRSAAFAKRSQSFMDRGAMSPHHFGQSAPSDGACRVSSALSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGNTNTTVARSENFEPDVSWVNSLVKDVPSEKQQQQFDPSREMLSPWVEQLYREHEQIVA 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1151 728 ProSiteProfiles Ankyrin repeat region circular profile. 164 198 - -
Lele26g1151 728 SMART ANK_2a 164 196 IPR002110 GO:0005515
Lele26g1151 728 SMART ANK_2a 129 159 IPR002110 GO:0005515
Lele26g1151 728 SMART c3hfinal6 357 380 IPR000571 GO:0046872
Lele26g1151 728 SMART c3hfinal6 322 348 IPR000571 GO:0046872
Lele26g1151 728 Pfam Ankyrin repeats (3 copies) 125 196 IPR002110 GO:0005515
Lele26g1151 728 SUPERFAMILY Ankyrin repeat 94 206 IPR036770 -
Lele26g1151 728 FunFam Zinc finger CCCH domain-containing protein 66 280 348 - -
Lele26g1151 728 ProSiteProfiles Ankyrin repeat profile. 164 199 IPR002110 GO:0005515
Lele26g1151 728 ProSiteProfiles Zinc finger C3H1-type profile. 322 349 IPR000571 GO:0046872
Lele26g1151 728 Gene3D - 84 227 IPR036770 -
Lele26g1151 728 PANTHER UNKEMPT FAMILY MEMBER 89 696 IPR045234 -
Lele26g1151 728 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 347 IPR000571 GO:0046872
Lele26g1151 728 Gene3D - 323 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1151 Lele-ChrLele26 7417367 7420444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1151 54 695 C2H2 Transcription Factor Family AT5G12850 41.320 7.07e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele26g1151 Ank_2 7.7e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1151 26 7417367 7420444 Lele27g0929 27 17230463 17235988 hybridization
Lele26g1151 26 7417367 7420444 Lele28g1144 28 7414996 7418412 hybridization