Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1134 ATGCCGTCGCCAGTGGTGATTTTGATGCTGTCAGGAACCTCCTCAAACGGCAGAGGCCCTTACACGTCGATTTGTCGCCCAATGAAGCTGAATCGCTCCTCCGAGTTGCCACCGAGTTGGTTAACCCGGACGGTATGGTTCTCTTGCTACTGGAAGCTGGATGGAGAGTGGAGGAGGAGTTGGGATCTGGTAACGGGGACCAGAGATTGGCTTCCACGCGGTGCGAATGTGAATGCCAGGTGTAACGACGGTCGCACGCCAATGTACATAGCCGCGGCCCATGATGACCGTAGGATGGTGGAAATGCTGATTGAAATGGGCGCTGACCCCACTATAACCGACGATCGTGGCCGTTCAGCCCTTTGCATTGCCAGTGACGAAGGATATCGGCAGAGGCTTGGGGACGTGAAGAAACTGGAGGCACTGTTGAAGAGAGGAGCGAGTGTAGAGTACTGTGATCGGTATGGTTTGACGGCACTTCATGCTTCAGCCATGAAAGGCCATGGAGAGATGTTATCGATGCTGACGGAAGCAGGGTTGGACTTGGAATGTGAGGACGGGGAAGGTCACGCGCCGCTGCATATGGCGGTGGAGAGTGGCGACCAAGACACCATACAAGTTTTAGTGAACAAGGCTGTGAATGTAAATTCCGCCAATAACAAGGGCGCCACCCCTCTGTACATGGCTAAAATTTTGGGACACGATGCTATAGCTGAGTTTCTTGTCAGCAAGGGAGCAATGTCCCGTTTTCCTGTAATTTTACTGTAA 768 0.5286 MPSPVVILMLSGTSSNGRGPYTSICRPMKLNRSSELPPSWLTRTVWFSCYWKLDGEWRRSWDLVTGTRDWLPRGANVNARCNDGRTPMYIAAAHDDRRMVEMLIEMGADPTITDDRGRSALCIASDEGYRQRLGDVKKLEALLKRGASVEYCDRYGLTALHASAMKGHGEMLSMLTEAGLDLECEDGEGHAPLHMAVESGDQDTIQVLVNKAVNVNSANNKGATPLYMAKILGHDAIAEFLVSKGAMSRFPVILL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1134 255 ProSiteProfiles Ankyrin repeat region circular profile. 221 246 - -
Lele26g1134 255 ProSiteProfiles Ankyrin repeat profile. 83 115 IPR002110 GO:0005515
Lele26g1134 255 ProSiteProfiles Ankyrin repeat region circular profile. 83 115 - -
Lele26g1134 255 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Lele26g1134 255 ProSiteProfiles Ankyrin repeat profile. 221 246 IPR002110 GO:0005515
Lele26g1134 255 PANTHER MYOTROPHIN 133 247 - -
Lele26g1134 255 Gene3D - 67 134 IPR036770 -
Lele26g1134 255 ProSiteProfiles Ankyrin repeat region circular profile. 188 220 - -
Lele26g1134 255 Pfam Ankyrin repeats (many copies) 74 124 IPR002110 GO:0005515
Lele26g1134 255 Pfam Ankyrin repeats (3 copies) 137 217 IPR002110 GO:0005515
Lele26g1134 255 Gene3D - 135 250 IPR036770 -
Lele26g1134 255 SUPERFAMILY Ankyrin repeat 71 246 IPR036770 -
Lele26g1134 255 ProSiteProfiles Ankyrin repeat region circular profile. 155 186 - -
Lele26g1134 255 ProSiteProfiles Ankyrin repeat profile. 188 220 IPR002110 GO:0005515
Lele26g1134 255 SMART ANK_2a 188 217 IPR002110 GO:0005515
Lele26g1134 255 SMART ANK_2a 221 252 IPR002110 GO:0005515
Lele26g1134 255 SMART ANK_2a 155 184 IPR002110 GO:0005515
Lele26g1134 255 SMART ANK_2a 116 151 IPR002110 GO:0005515
Lele26g1134 255 SMART ANK_2a 83 112 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1134 157 246 Acyl Lipid Metabolism Gene Families AT5G53470 37.778 2.15e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1134 26 7300082 7301426 Lele25g1147 25 7390741 7402155 CCT
Lele26g1134 26 7300082 7301426 Lele26g1147 26 7372915 7384377 CCT
Lele26g1134 26 7300082 7301426 Lele27g0933 27 17266674 17278140 CCT
Lele26g1134 26 7300082 7301426 Lele28g1139 28 7370446 7381881 CCT
Lele26g1134 26 7300082 7301426 Lele27g0945 27 17354056 17355802 hybridization