LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g1107	ATGGTTTCTAATAAACAGCACAAGAGAGAAGCTCTGCATGAGAAGCTTCAACTCCTTCGTTCTATTACTAACTCTCATTCTCTAGACAAAACCTCTATCATATTGGACGCAACAAAGTACATCGAAGGGCTAAAGCAAAAGGTAGAAAGACTGAATCAAGACATAGCCACTGCAGAAACTTCAAAAGACCAAAATCATCTGCCTATGGTTACAGTAGAAGCCCTAGAAAAGGGATTCCTCATAAATATATATGCAGCCAAGAGTTGCCCGGGCCTGCTAGTTCCCATATTGGAGGTATTCGAAGAGATGGGTCTCAGAGTTATGGAAGCTAGGGTTTCATGTTCAGACACTTTCCGATTTCAGGCAGTAGGAGGAGAAGAAAAAGACGAAGGTGATAGCATGGATGCAGAAACCGTGACACAAACAGTGAGAAGAGCCATAAAGAATTGGAGAGAGAGTACGAGTCAACAGTAA	474	0.4219	MVSNKQHKREALHEKLQLLRSITNSHSLDKTSIILDATKYIEGLKQKVERLNQDIATAETSKDQNHLPMVTVEALEKGFLINIYAAKSCPGLLVPILEVFEEMGLRVMEARVSCSDTFRFQAVGGEEKDEGDSMDAETVTQTVRRAIKNWRESTSQQ	157

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g1107	157	Gene3D	-	4	67	IPR036638	GO:0046983
	Lele26g1107	157	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	5	153	-	-
	Lele26g1107	157	Coils	Coil	34	61	-	-
	Lele26g1107	157	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	6	58	IPR036638	GO:0046983
	Lele26g1107	157	CDD	ACT_UUR-ACR-like	80	147	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g1107	Lele-ChrLele26	7155072	7156282	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g1107	12	145	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G10570	27.397	1.03e-08	51.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele26g1108	26	7166030	7169032	Lele26g1107	26	7155072	7156282	CCT
	Lele27g0970	27	17487579	17488264	Lele26g1107	26	7155072	7156282	CCT
	Lele28g1101	28	7146717	7149687	Lele26g1107	26	7155072	7156282	CCT
	Lele25g1107	25	7153415	7160410	Lele26g1107	26	7155072	7156282	CCT
	Lele25g1107	25	7153415	7160410	Lele26g1107	26	7155072	7156282	ECH
	Lele41g0225	41	1839189	1840569	Lele26g1107	26	7155072	7156282	ECH
	Lele42g0219	42	1839556	1841011	Lele26g1107	26	7155072	7156282	ECH
	Lele43g1139	43	19745146	19746519	Lele26g1107	26	7155072	7156282	ECH
	Lele44g1127	44	19894749	19896676	Lele26g1107	26	7155072	7156282	ECH
	Lele01g1015	01	5882328	5883424	Lele26g1107	26	7155072	7156282	ECH
	Lele02g1030	02	6343401	6344516	Lele26g1107	26	7155072	7156282	ECH
	Lele03g1016	03	5890967	5892075	Lele26g1107	26	7155072	7156282	ECH
	Lele04g1019	04	6316093	6317161	Lele26g1107	26	7155072	7156282	ECH
	Lele26g1107	26	7155072	7156282	Lele26g1107	26	7155072	7156282	ECH
	Lele26g1107	26	7155072	7156282	Lele27g0971	27	17498787	17507618	hybridization
	Lele26g1107	26	7155072	7156282	Lele28g1100	28	7133272	7138483	hybridization