Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1056 ATGACAGGACCAGCAAGGTGCTACAGGCAAATTAAAAACAAACCTTACCCAAAATCACGCTTCTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGAATGAAAAAGAAAGGCGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGTTGGGAGAAAGAAAACGTTTCAAGTGAGGCTCTGGAAGCTGCTCGGATTGCATGCAACAAATACATGGCTAAATTCGCTGGAAAGGATGCATTCCACTTGAGGGTTAGGGTACATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGCGCTGGAGCTGATAGGCTCCAAACAGGAATGAGAGGTGCATTTGGAAAGCCCCAAGGAACATGTGCTAGAGTGGCCATTGGTCAGGTTCTGCTTTCTGTTCGCTGCAAGGACGGCAACAGCCATCATGCTCAGGAGGCCCTCCGTCGTGCTAAGTTCAAGTTCCCTGGCCGCCAAAAGATCATTGTTAGCAGAAAATGGATTAGTTCGTTAAGTGATTTGATAGGTGAAAGGGGTTTCACCAAATTTAGCCGCACTGACTATGTGAGGTTCAAGTCAGAGAACAGGATCGTGCCAGATGGTGTAAATGCCAAGCTTCTTGGATGCCATGGACCTTTGCCTAACCGTCAGCCTGGAAGAGCCTTTCTTCACGCAACTTCTTAG 693 0.4618 MTGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDGNSHHAQEALRRAKFKFPGRQKIIVSRKWISSLSDLIGERGFTKFSRTDYVRFKSENRIVPDGVNAKLLGCHGPLPNRQPGRAFLHATS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1056 230 CDD Ribosomal_L16_L10e 40 165 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele26g1056 230 TIGRFAM uL16_euk_arch: ribosomal protein uL16 4 170 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele26g1056 230 PANTHER 60S RIBOSOMAL PROTEIN L10 3 223 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele26g1056 230 Gene3D Ribosomal protein L10e/L16 2 227 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele26g1056 230 Pfam Ribosomal protein L16p/L10e 11 165 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele26g1056 230 FunFam 60S ribosomal protein L10 1 216 - -
Lele26g1056 230 SUPERFAMILY Ribosomal protein L16p/L10e 4 170 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele26g1056 230 ProSitePatterns Ribosomal protein L10e signature. 107 128 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1056 Lele-ChrLele26 6845700 6848214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1056 4 230 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 82.379 1.36e-137 383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0124 02 724859 731086 Lele26g1056 26 6845700 6848214 CCT
Lele03g0127 03 712995 715729 Lele26g1056 26 6845700 6848214 CCT
Lele26g1056 26 6845700 6848214 Lele27g1025 27 17860592 17863614 hybridization
Lele26g1056 26 6845700 6848214 Lele28g1048 28 6816018 6821563 hybridization