Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele26g1055 | ATGGGAACCTCAGGGCTTCATGAGACAGATCAACGCACCATTTCTTCATCTTCGTCTTCTGCTGGAGTTGTAAATACGACTGATGGTAACAACAACACTGCCAGTACTGGAAGTGTAATGTGGTATGGGGTGCGGTTGCCTTCTCCCCTCTCTTTTTTACTGGATTACTCTGACCGTCTTCGCTTGAGCTCGTCAATCGGCTATTATGAGTCTGTAATTGACAACAACAACGAAGCTACCGTTCCTGAATTACGACCGGACCGTCAAGCTTCTTCTTTGGATTCTTCTGCTGTAACCATTTGCAGTGGCCGCAGCAGGGAGAGCAGTTCAGGGGAAGTTGCGATACGAATTGGTGGAGGGGTCGAACGGAATCACAATGCAGGGTTGGGTTCTGTTTCGTCAGCATCCCAAAATCAGTCCGTAGACGATGATGATTTAATGGGAAATAAAGGTGGAATGCCTGTTCTGAATGAGGATGCTGAGGGTAGCAGTGGAACTATGGCTGGTGAGAGAGCTCCTCTAGTGCCCTCATCATCGTCTATGGCAGGTAGTACTAGTGGACAGGATGATATTGATGCTGGGAATGGCTTTGAAAGTAATCGTCGGGGTTTATCGTCTCATGAAAGTAATGATTTTCAGCAACTTGCTAAATTGCTTGAGCAGGTTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTGTTCATTCGCCAGCATTTGCAAGGTTTCATCATCACAATTTGGATTTCAATTGTGATGTTCAAGTCAAATGAAATAGTTAAGAAGCAGACAGCTCTAAAGGGAGATAGGAAAGTCCCAGTTCTCGTCGGTATCTCATTCGTCTTCGTGATTCATGTGATGTGCATTTACTGGTGGTATCAGGATGATGATCTTTTATACTTACCACTGATCTTGCTTCCTCCAAAAGCAACACCTCATTTCTGGCATGCAATATTCATCGTTCTGATTAACGATGTACTTGTGCGGCAAGCAGCGATGTCTTTCAAGTGCTTGCTACTTATATATTTCAAGAATGACCGAGGTCACAGCTTCCGTCTGCAGGCTCAAATATTAAATCTGGTGGAGCACGCGCTGCTGCTGTACCGTAACTTGATGCCAGCGCCTGTTTGGTACTGGTTTTTCCTAAACAGGGAATATGGAAGTCTCTTTTCGTCGCTGACCACGGGGTTGTACCTAACCTTCAAGTTAATGTCTATTGTTGAGAAGAGCCAATGCTTCTTTGCCGCCTTAAAAGCATTATCCGGCAAGGATATTCTCTATGGCGTATATGCTACAAAGGAACAGGTAAATGCCGCGGGCGACCTTTGCGCTATATGCCAAGAGAAGATGCGCGGTCCTATCTTGTTGCGCTGTAAACACATTTTCTGTGAAGAGTGTGTGTCAGAATGGTTTGACAGAGAAAGAACTTGTCCACTATGTAGAGCATTGGTGAAGGCCGGTGATATTCGATCTTTCGGCGATGGATCGACAAGTCTGTTTTTCCAGCTATGTTAA | 1509 | 0.452 | MGTSGLHETDQRTISSSSSSAGVVNTTDGNNNTASTGSVMWYGVRLPSPLSFLLDYSDRLRLSSSIGYYESVIDNNNEATVPELRPDRQASSLDSSAVTICSGRSRESSSGEVAIRIGGGVERNHNAGLGSVSSASQNQSVDDDDLMGNKGGMPVLNEDAEGSSGTMAGERAPLVPSSSSMAGSTSGQDDIDAGNGFESNRRGLSSHESNDFQQLAKLLEQVLPFSLLLLVVFIRQHLQGFIITIWISIVMFKSNEIVKKQTALKGDRKVPVLVGISFVFVIHVMCIYWWYQDDDLLYLPLILLPPKATPHFWHAIFIVLINDVLVRQAAMSFKCLLLIYFKNDRGHSFRLQAQILNLVEHALLLYRNLMPAPVWYWFFLNREYGSLFSSLTTGLYLTFKLMSIVEKSQCFFAALKALSGKDILYGVYATKEQVNAAGDLCAICQEKMRGPILLRCKHIFCEECVSEWFDRERTCPLCRALVKAGDIRSFGDGSTSLFFQLC | 502 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele26g1055 | 502 | ProSitePatterns | Zinc finger RING-type signature. | 456 | 465 | IPR017907 | - | |
| Lele26g1055 | 502 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 18 | 501 | IPR044235 | GO:0061630|GO:1904294 | |
| Lele26g1055 | 502 | SUPERFAMILY | RING/U-box | 435 | 483 | - | - | |
| Lele26g1055 | 502 | MobiDBLite | consensus disorder prediction | 127 | 144 | - | - | |
| Lele26g1055 | 502 | MobiDBLite | consensus disorder prediction | 126 | 205 | - | - | |
| Lele26g1055 | 502 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 426 | 488 | IPR013083 | - | |
| Lele26g1055 | 502 | SMART | ring_2 | 441 | 478 | IPR001841 | - | |
| Lele26g1055 | 502 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Lele26g1055 | 502 | CDD | RING-HC_RNFT1_like | 440 | 479 | - | - | |
| Lele26g1055 | 502 | ProSiteProfiles | Zinc finger RING-type profile. | 441 | 479 | IPR001841 | - | |
| Lele26g1055 | 502 | Pfam | Zinc finger, C3HC4 type (RING finger) | 439 | 482 | - | - | |
| Lele26g1055 | 502 | MobiDBLite | consensus disorder prediction | 177 | 205 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele26g1055 | Lele-ChrLele26 | 6839729 | 6843297 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele26g1055 | 88 | 501 | C3H Transcription Factor Family | AT5G01960 | 57.246 | 5.08e-168 | 479 |