Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1016 ATGGAAAATCGACCAGGCTATGACTTACATGCGGTAGTTCGTAGCCTTAAAACTCGCTGTCGGTTCTTCGTTACCTGCGCGGCATTTGAACTGTGTTTTTTTTTTGTTCTAGTAAAAAAGATGACAAGCGCTTGGACAAATATGAGCTTTGCAATCAAACATAGGGATATAGAGAGGGAGTGGGAGAATCAGGGTGGAGTTTTGCTTTGGAGCATCTTTGGAGCAAATGAGCAATGGAGCTTGTGGAGCACGGCTCACCTCGAGGATTGCTCTCTTGGTTTGCTTCATAGTTTTGGATTCCTTTACATTTGCGTAATCATTAGAGTAATGATGATAATAAATATGAGTGGTCGCTTTTCTCGCACTATTTATGTTGGCAACCTGCCCTCAGATATAAGAGAGTCAGAAATTGAGGATCTATTCTACAAGTATGGCCGTATATTGGATATCGAGTTAAAGATTCCTCTTCGACCTCCATGTTACTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGACGGTTGTCGATTAAGGGTGGAGCTTGCGCATGGTGGTAGGGGGCCATCATCAAGTGATCAGCGTGGTTATGGTGGCAGTGGGAGCCGTTTTGGCATCTCACGTCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTAAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCCGAGGTTTCTCGTGATAGTGAAGGTACATTTGGCATTGTTGATTACACTAATTATGACGACATGAAATATGCTATTCGGAAACTTGATGACACCGAATTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCAGGAGCCCTGGCAAAAGCAGGAGTCCTAAAAGGAATAGAAGTAGGTCATTGGAGCGATCTGTATCCAGGTCACCATCTAGGTCTAGATCACCATCACCAATCAAATCTAGGCCAAGATCACCATCACGGTCACGGTCTCGGTCACAATCTGGATCACCATGCTAG 1089 0.4426 MENRPGYDLHAVVRSLKTRCRFFVTCAAFELCFFFVLVKKMTSAWTNMSFAIKHRDIEREWENQGGVLLWSIFGANEQWSLWSTAHLEDCSLGLLHSFGFLYICVIIRVMMIINMSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPLRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDQRGYGGSGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSPGKSRSPKRNRSRSLERSVSRSPSRSRSPSPIKSRPRSPSRSRSRSQSGSPC 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1016 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Lele26g1016 362 MobiDBLite consensus disorder prediction 300 362 - -
Lele26g1016 362 Gene3D - 115 222 IPR012677 -
Lele26g1016 362 SMART rrm1_1 224 293 IPR000504 GO:0003723
Lele26g1016 362 SMART rrm1_1 122 192 IPR000504 GO:0003723
Lele26g1016 362 CDD RRM2_SF2_plant_like 223 298 - -
Lele26g1016 362 CDD RRM1_SF2_plant_like 122 193 - -
Lele26g1016 362 FunFam serine/arginine-rich splicing factor SR34A-like 223 300 - -
Lele26g1016 362 MobiDBLite consensus disorder prediction 331 362 - -
Lele26g1016 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 196 IPR000504 GO:0003723
Lele26g1016 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 287 IPR000504 GO:0003723
Lele26g1016 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 190 IPR000504 GO:0003723
Lele26g1016 362 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 121 355 - -
Lele26g1016 362 Gene3D - 223 300 IPR012677 -
Lele26g1016 362 SUPERFAMILY RNA-binding domain, RBD 120 292 IPR035979 GO:0003676
Lele26g1016 362 FunFam serine/arginine-rich splicing factor SR34A-like 116 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1016 Lele-ChrLele26 6609780 6613828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1016 123 285 Eukaryotic Initiation Factors Gene Family AT4G34110 26.036 1.02e-07 52.0