Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1014 ATGTATGCAAACAACACCAGGATAGTTTTCGCCACAAACAAAAAAAATTCTGCGAGTATCTCTTCGATTATGGCTGTTGCTGAGAATGTTGGTGCCATAATCGGCTCTTCCGGTGAAAATTTGGAAAACCGCGTAGTATCCTCTGACTCAACTGTACCTAAGGAACTGGAGAAATCGAAGCTCAAACCTGGTTCCATAGGAAATGGTATAGAAACTAATGTTCAGGCCGTCAATAGTGATCAGAATCTGAACGCTGTCTTCAACAACAAAGACATCGTTTCGACTACTATATCAGTCCCCAATAATAACTATAAAGCTCAGATGGCTCAGATGCGAAATGGATTTGAAGAAAATGGGGTCCAGACTCAACAGATGGTAATGAACAATGGTGGATATGGCATCAACCAGATTTCTAATGGGGTGAGAAATGGGGGAGACGACAATGGTGAAAGTTTCAAGCGAGATATGAGGGATTTGGCGGAACTATTATCAAAGTTGAATCCTATGGCTGAAGAATTTGTGCCCCCATCGCTTACTAAGAATCATGGGATCTTAGGCGGTGGGGGAGGATTTGGCTACCCTAACAATTTTCTATTACAGGCTAACATCAATGCCAATGGTCAAATTAACAGAAGGAGGAAGAATGGCTATAATCAGGGAAAGAGAAGAATGAATCATAAAATGGATGTGGAAAAGAGAGAAGAGATGATAAGAAGGACCGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCGGCTCTGTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGAGTATGTGGGGATCCAAATTCCATTCTTCGTTTTGCCTTCATTGAATTCACAGATGAAGAAGGTGCTAGGGCTGCTTTGAATCTATCTGGCACTATGCTTGGGTATTATCCAGTGAGAGTACTGCCTTCAAAAACTGCCATTGCACCAGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGTTCAAGAACCATTTATTGCACAAATATTGACAAAAAGGTAACTCAGGCAGATGTCAAACTCTTCTTTGAGTCTCTCTGTGGAGAGGTTCATCGCTTGAGGCTTCTTGGTGATTATCATCATTCAACTCGAATTGCATTTGTTGAGTTCATGATGGCTGAAAGTGCAATTGCAGCTCTGAACTGTAGCGGTGTGATTTTGGGATCACTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTCCGGTCTCGCACACCTCGTTCTCATATGCACTGA 1275 0.4251 MYANNTRIVFATNKKNSASISSIMAVAENVGAIIGSSGENLENRVVSSDSTVPKELEKSKLKPGSIGNGIETNVQAVNSDQNLNAVFNNKDIVSTTISVPNNNYKAQMAQMRNGFEENGVQTQQMVMNNGGYGINQISNGVRNGGDDNGESFKRDMRDLAELLSKLNPMAEEFVPPSLTKNHGILGGGGGFGYPNNFLLQANINANGQINRRRKNGYNQGKRRMNHKMDVEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVHRLRLLGDYHHSTRIAFVEFMMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRTPRSHMH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1014 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 412 IPR000504 GO:0003723
Lele26g1014 424 SMART rrm1_1 240 310 IPR000504 GO:0003723
Lele26g1014 424 SMART rrm1_1 337 408 IPR000504 GO:0003723
Lele26g1014 424 CDD RRM2_CID8_like 332 413 IPR034825 -
Lele26g1014 424 CDD RRM1_CID8_like 237 316 IPR034823 -
Lele26g1014 424 SUPERFAMILY RNA-binding domain, RBD 327 417 IPR035979 GO:0003676
Lele26g1014 424 Pfam Ataxin-2 C-terminal region 163 177 IPR009818 -
Lele26g1014 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 405 IPR000504 GO:0003723
Lele26g1014 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 303 IPR000504 GO:0003723
Lele26g1014 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 314 IPR000504 GO:0003723
Lele26g1014 424 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 161 418 - -
Lele26g1014 424 SUPERFAMILY RNA-binding domain, RBD 209 315 IPR035979 GO:0003676
Lele26g1014 424 FunFam Polyadenylate-binding protein-interacting protein 11 203 316 - -
Lele26g1014 424 Gene3D - 323 420 IPR012677 -
Lele26g1014 424 Gene3D - 203 316 IPR012677 -
Lele26g1014 424 FunFam Polyadenylate-binding protein-interacting protein 10 330 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1014 Lele-ChrLele26 6601057 6605831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1014 238 400 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 2.63e-10 60.1