Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1003 ATGATGGAGGTTGATGAAGAGTATATTCAAGCATCAGAAGAAAGCTTCATCAGCTGCTCAGAGCCCTCTCAGAATTCAAGGAAGAAGAACAAAGTGGTGAACAAGAGGAGGTTTAGTGATGAACAAATCAGATCATTGGAGGGCATATTTGAGTCAGAGTCCAAGTTAGAGCCAAGGAAGAAGATCCAAGTAGCGAGAGATCTTGGGCTGCAACCTCGCCAAGTCGCCATATGGTTCCAGAACAGAAGAGCAAGAGGGAAATCCAAATGGATAGAGCAAGAATACAGGAAGCTCAGAGATGAGTATGATAATTTAGTTTCCAGGTTTGAGTCCCTTGAGAAAGAGAAAGAGTCCTTGCAAGTAGAGTTGCAGAATCTGCATGATCTAATGGAGACATCTCACAATGGCGAAGGGAAAAAGAGCACAGATAAGCCAAGTTCCTCTTATGAGGGTTTGGAGGTCAGAGAAGGAGGCATGCATTTACAAGATCAAAGAGAAATGAGCAAGAAGAATAATGGGTATTCTGAGGATAATACAGAATACCAACTTCTGAGAATGGAAATGGACGAGCTTGAAAAATGGTACGGTGGCGATCCAAGTGGCCTCTTAGATCCACCTTGTAGTTCACAATGGTTGGATTTTTGGACTTGA 651 0.4286 MMEVDEEYIQASEESFISCSEPSQNSRKKNKVVNKRRFSDEQIRSLEGIFESESKLEPRKKIQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYRKLRDEYDNLVSRFESLEKEKESLQVELQNLHDLMETSHNGEGKKSTDKPSSSYEGLEVREGGMHLQDQREMSKKNNGYSEDNTEYQLLRMEMDELEKWYGGDPSGLLDPPCSSQWLDFWT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1003 216 Gene3D - 14 93 - -
Lele26g1003 216 Coils Coil 95 132 - -
Lele26g1003 216 SMART HOX_1 27 93 IPR001356 GO:0003677
Lele26g1003 216 MobiDBLite consensus disorder prediction 132 173 - -
Lele26g1003 216 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Lele26g1003 216 MobiDBLite consensus disorder prediction 130 178 - -
Lele26g1003 216 SUPERFAMILY Homeodomain-like 19 88 IPR009057 -
Lele26g1003 216 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Lele26g1003 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 172 IPR045224 GO:0003700
Lele26g1003 216 CDD homeodomain 35 90 IPR001356 GO:0003677
Lele26g1003 216 FunFam Homeobox-leucine zipper protein ATHB-7 13 89 - -
Lele26g1003 216 Pfam Homeobox associated leucine zipper 90 130 IPR003106 GO:0006355|GO:0043565
Lele26g1003 216 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Lele26g1003 216 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Lele26g1003 216 Pfam Homeodomain 35 87 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1003 Lele-ChrLele26 6522421 6523184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1003 12 122 Homeobox Transcription Factor Family AT2G46680 62.162 2.34e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele26g1003 Homeodomain 5.7e-16 CL0123