Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0981 ATGGGTGCCGTACTGCTGTGGAGGCCCCTGGCCACAGACGTGGGCATTGATGAGATGGCGGACGATTCAATTGATCACGCCTCACTCATTCCAGCATCTGAATTACTTTTTCATACTGTCCTTAATATATCTGATATCACCAAAGCAGCCAATGAGATTCTGATTCAGAAGGATAATTTCAGAAAATTCTCAACTTACCTGGAGAAAGTCTCATTAATATTAAAAGGACTACCAAAAGAAGACATACACCATGCAGAGAGCTTGAAAAATTCCCTGGGTGTTCTGAACCAACAAGTTAAAGTTGCTAAACAGCTGGTTTATGAGTGCAACTGCAAGAGTAAGATTTATCTTTTGATCAGTTGCAGAAAGATTGCTAAGAATTTGGAGTGTTGTACGAAAAACATAAGCCGAGCCGTGAGCCTCATCCCTCTCACCTCTTTGGATGTTTCTTCTGGTCTAAGTAAACAAATAAGTGAGCTATGCCAGAACATGTTAGACGATGAGTATAAAGCATCTGCAGCAGAAGAGGAAATTCTGAAAAAACTTGAGTGGGCAATACAAGAAGGAAATGCCGAGCGCTCTTATGCTAATCAGTTGCTAGCTCGTGTTGTGGATGTCATTGGGATCTCAACCGAGCATGCTGTTATAAAGAGAGAATTTAAAGAGTTGAAAAGTGACATGCAAATTGCTGGGTCAAGAAGAGATATAGCAGAAGCTCTACATATGGAGCAGATTGTTGGAGTGCTTGAAAAAGCTGATTCTGTCACTTCATCACAAGAGAAGGAGAAGAAGTATTTTGAAAAGCGAAATTCGCTGGGACGACAACTGATGGAGCCGTTACATTCGTTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCTGGCGAGACATTTGAGAGAAAGGCAATAGAGAAGTGGCTTGCAGAAGGGAACAACAAGTGTCCCTTAACCACGTTGCCTCTGGATACTTCAAAATTAAGACCTAATAAGACTCTTCGGCAGTCAATTCAAGAATGGAAAGATAGGAACACCATTATCACCCTTTCTACTCTTAAGTCCAAACTTGAGAGTGATGATGATGAAGAGGAAATGCTTCAATCCTTAGAAAAATTGCAGGGCCTCTGCTTGGAGAGACAGATGCACCGAGAATGGCTGAAAATGGAGAATTATATCACAACTCTGATCAAGCTCCTCGGTGCTAAAAATAGAGAAATAAGGAAGCGGGTTCTCTCCATCCTGTCTTTGCTTGCAAAGGACAATGAAGAGAACAAGGAAGATATTGCTAAAGCTGATAATGCACTAGAATCAATTGTTCGCTCGCTTGCACGGCAAATAGAGGAAAGCAAGTTGGCAGTGGAGTTGCTGTTAGAATTGTCTAGAAGTACTGTGGTGCGTGATCTCATAGGAGATGTTCAAGGAAGCATACTCCTCTTGGTAACAATGTTAAGCAGTGATGATGTTGAAGCAGCCCATAATGCACGTGAGCTTCTCGGTAACCTCTCTTTCCTTAACCAGAAAGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCAGAACCTTTCTTCAGGAACGGAAAATGTGAAGATAATCATGGCCAAAACGTTATCAGAGATTGAATTGACTGACCAGAATAAAGTATCAATAGTCAAAGATGGGGCACTTCAGCCACTTCTTCAGTTGCTCTCTAATTCTGACGTGCAAATCAAGGAAGTAGCTGTGAAAGCTCTTCTGCAGCTTTCAAGCTTGCCAGAAAATGGCCTACTGATGATTAGGGAGGGTGTTGCTCAATCACTATTCGAGCTGCTATTTCGTCACAGTTTACAATCGACTGCTCTGCGAGAACAGGCGGCCGCCACTATGGTGCATCTTGCCATGTCAACCACTCACCAACGAGCCGATGAAGTTCAGGTTTCATTGCTAGATTCTGAGGATGACGTATTTAAATTCTTCTCCCTTGTTTCCTTCACAGGACCTGATATACAAAGCAAGATTCTGAAAACTTTCCTGGCGATGTGCCAATCTCCCTCTGGTCTCACCATCAGAGAAACGTTAAGACAGCTCTCAGCTGTTCAAGTATTAGTTCACTTGTTGGAGCTCGATAACCAAACTGTTCGCGCAAATGCCATGATGCTGTTCTATTACCTGACAGAAGGTGGCGATGATTGCAGAAACTTTACATCACATGTAACTGAAAGATGTATCAATGTCTTGCTCACCGTCATCCAGACTACTGATGATGCAGAAGAGGTTGTTTCTGCTATGGGTATCATCTCAAGACTTCCAAGGGAACCACATATAACCAAGTGGCTTTTAGATTCTGGCGCGGTTAAAATTATCTTGGATTGTCTTTTGGATCGACATAAACACACCTCGCACAAACGGCAAGTCATCGAGAAATCCGTTCAAGCTCTTTGTCGTTTTACTGTCTCAACAAACATAGAGTGTCAGAAGACAGTAGCTCAAGAAGGCATCATTCCTATCCTGGTTCAATTGCTGGATTCTGGGACATCCCTGTCAAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGCTCACGGCTCTTAAGCAAGCCGATAAAAAACCCGGGCATATTCAAATTCTGCTTCGTACCTCGTGAAATCGGTTGTCCGGCGCACCTGGGCACGTGTACAGTTGAGTCTTCATTCTGTATCATAGAAGCTGATGCTTTGAAGCCCCTCGTGAGGTTGCTTGAAGAGCAAGATATTGGAACATGTGAAACTTCTTTAGATGCACTTTTGACTTTGATTCATGATGAAACACCACATGGTGGATGTAAGGTGCTTGCAGATGCAAATGCTATAATTCCACTGATAAAGTTATTGAGTCTTCAATCTGCCAGATTGCAGGAAAAAATTCTGGTAGCTTTAGAGAAAATATTTCAAGTCGAGGAAATAAAGAATAAGTATAAAGGTTCAGCCATAATGCCATTGGTAGACATAACACAGAGGAAAGATAGCCGATTGAGAAGTCTTGCTGCCAGGGTCCTTGCACAATTGGGTGTACTTGAGAAACAATCTTCTTATTTTTAA 3084 0.4212 MGAVLLWRPLATDVGIDEMADDSIDHASLIPASELLFHTVLNISDITKAANEILIQKDNFRKFSTYLEKVSLILKGLPKEDIHHAESLKNSLGVLNQQVKVAKQLVYECNCKSKIYLLISCRKIAKNLECCTKNISRAVSLIPLTSLDVSSGLSKQISELCQNMLDDEYKASAAEEEILKKLEWAIQEGNAERSYANQLLARVVDVIGISTEHAVIKREFKELKSDMQIAGSRRDIAEALHMEQIVGVLEKADSVTSSQEKEKKYFEKRNSLGRQLMEPLHSFYCPISLDIMEDPVETSSGETFERKAIEKWLAEGNNKCPLTTLPLDTSKLRPNKTLRQSIQEWKDRNTIITLSTLKSKLESDDDEEEMLQSLEKLQGLCLERQMHREWLKMENYITTLIKLLGAKNREIRKRVLSILSLLAKDNEENKEDIAKADNALESIVRSLARQIEESKLAVELLLELSRSTVVRDLIGDVQGSILLLVTMLSSDDVEAAHNARELLGNLSFLNQKVIEMAKANYLKPLLQNLSSGTENVKIIMAKTLSEIELTDQNKVSIVKDGALQPLLQLLSNSDVQIKEVAVKALLQLSSLPENGLLMIREGVAQSLFELLFRHSLQSTALREQAAATMVHLAMSTTHQRADEVQVSLLDSEDDVFKFFSLVSFTGPDIQSKILKTFLAMCQSPSGLTIRETLRQLSAVQVLVHLLELDNQTVRANAMMLFYYLTEGGDDCRNFTSHVTERCINVLLTVIQTTDDAEEVVSAMGIISRLPREPHITKWLLDSGAVKIILDCLLDRHKHTSHKRQVIEKSVQALCRFTVSTNIECQKTVAQEGIIPILVQLLDSGTSLSKQNAAISIKQFSESSRLLSKPIKNPGIFKFCFVPREIGCPAHLGTCTVESSFCIIEADALKPLVRLLEEQDIGTCETSLDALLTLIHDETPHGGCKVLADANAIIPLIKLLSLQSARLQEKILVALEKIFQVEEIKNKYKGSAIMPLVDITQRKDSRLRSLAARVLAQLGVLEKQSSYF 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0981 1027 SUPERFAMILY ARM repeat 897 1018 IPR016024 -
Lele26g0981 1027 CDD RING-Ubox_PUB 283 323 IPR045210 -
Lele26g0981 1027 SUPERFAMILY ARM repeat 522 876 IPR016024 -
Lele26g0981 1027 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele26g0981 1027 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 33 1027 - -
Lele26g0981 1027 Pfam U-box domain 283 349 IPR003613 GO:0004842|GO:0016567
Lele26g0981 1027 Pfam Armadillo/beta-catenin-like repeat 551 589 IPR000225 GO:0005515
Lele26g0981 1027 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 603 IPR000225 GO:0005515
Lele26g0981 1027 SUPERFAMILY RING/U-box 268 351 - -
Lele26g0981 1027 Gene3D - 886 1024 IPR011989 -
Lele26g0981 1027 Gene3D - 656 878 IPR011989 -
Lele26g0981 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 355 IPR013083 -
Lele26g0981 1027 Gene3D - 356 548 IPR011989 -
Lele26g0981 1027 Gene3D - 549 655 IPR011989 -
Lele26g0981 1027 SMART arm_5 938 979 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 821 861 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 467 508 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 895 935 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 550 590 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 771 818 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 426 466 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 685 726 IPR000225 GO:0005515
Lele26g0981 1027 SMART arm_5 384 424 IPR000225 GO:0005515
Lele26g0981 1027 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele26g0981 1027 SUPERFAMILY ARM repeat 353 514 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0981 Lele-ChrLele26 6405502 6410895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0981 282 1027 U-box Gene Family AT1G76390 27.743 1.12e-63 229