Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0947 ATGATAATCAAGCGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACTCGGCTGGGGACGACGATGACTGCTCTGCGGCTCGGAAGAAGAGGAAGACTAATGGGTATTACCCTTTGAATCTTCTAGGCGATGTCGCCGCCGGTATACTTCCTGTTAGCTTCCATGGCTTACTAGGTGCTGGTGTTTCTGAGAAGGGCTTTTCTGCATCATGGTGTGCGGAAGTCTCGTGCTCCCCTGTTGAGGCGGAGTCAAAGTCCAAGGTTGGGAACTCTGTAACAGCAAGGATGAATCGGCCTGCTGAAGAACCACGGCCGCCGCTGGTCAGAACGTCAAGAGGCCGAGTTCAGGTACTCCCTTCGCGTTTCAACGATTCAGTTATTGAGAATTGGAGGAAAGAAGGTAAGGCGAACTCTCGGGATTATAGTTTTGAAGAGGAACTTGATAGTAGAAAGGAGAATAGTTTTAGGACACCGAAATCATACAACCAGAATACCAGAAAAGGGAGAAACGATAATAAAATTGGCTATAAGTCTCGGAAATATTTGGCATTGTACGAGGAGGAGGAGGAGGTAAGAGAGGATGGGCCTGTAAGGTATAGAAATTTGACGAGGAAGTATTCAACTTCTAGCGCACTCAACCCAAAGCGCGAACAATTAATTGAACACGAGAGACGCGGATTTATGTACATGGAAGAAGTTGATATAACTGGTAACGAGAGATTTTTGAAGGAGAATGGCGAGAAAAAGGATGGATTATATGGACCAGAAGACTTTTACGCAGGTGATATAGTGTGGGCCAAAGCAGGGAAGAAGGAGCCCTTTTGGCCAGCCATTGTCATCGATCCAATGTCTCAGGCACCTGAGCTGGTCCTGAGGTCTTGCATAGCTGATGCAGCTTGTGTGATGTTTCTTGGGTACTCTGCAAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTCCCGTTTATAGATTATGTAGACAGGTTTCAGGGACAGGTGGAATTGAGTTACTATAACCCTTCTGATTTTCAAGTAGCAATAGAGGAGGGATTCTTGGCAGATCGGGGATTTACAGAGAAGTTGATAGCAGACATAAATTTAGCAGCTGGCAACACAGGGTATGATGAAACCTTTCCAAGAGGCATACAGGAGGCCCCTGGTTCAAAGCAGTATGCAGGATGTCACTTTCTGAGCCAGGAGTTTTTTGATAAGAGGAAAGATACACGACCCTGTGAAGTTTGTGGCTTGGATCTTCCTTTCAAAACGTCAAAGAAAATGAAGGATTCAACTCCTGGAGGCCAATTTTTATGTAAAACATGTGCCAGGGTTTGTCTGATTTTCCTTTCTCTGCTGACAGTTTTTATACAATTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGTTGTGATGGATGTAAAGTTTGGGTGCATGCAGAATGCGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGGAACTGATTATTACTGCCCAACGTGTAAAGCCAAGTTTGACTTTGAGTTATCCGATTCAGAAAAGTCACAGCCAAAACTCAAATGGAACAAGAACAATGGGCAGCTAGTGCTACCAAACAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCTAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAGAAGCAAGCACTTAGTGAATGGGAACGACACACTGGTTCCAAGTCAAGAAATTGGAGAACAAGTGTTAGGGTGAAAGGCTCTATGCTCCCACTGGAACAATGGATGCTACAGTTGGCAGAATTTCATGCAAATGCTCAAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTGCATTTTTACAAGAGAAGTATGAACCAGTTTATGCTAAGTGGACAACAGAACGGTGTGCTGTGTGTAGATGGGTAGAAGATTGGGACTATAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAGTGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACAGCTGACATTAAACGAGAGTGTTGTCTATGTCCTGTAAAGGGTGGTGCACTAAAGCCAACCGATGTGGACACACTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAAAAGATGGAGCCTGCTTCGGGTATTCTGAGTATTCCATCTAATTCTTTTGTGAAGATTTGTGTTATATGTAAGCAAATTCATGGGTCATGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCGTCAAGGGCTGGATATCGCATGGAGTTGCATTGCTCAGAGAAAAATGGCAGGCAAACAACAAAAATGGTTTCTTATTGTGCATACCACAGGGCTCCAAATCCAGACACGGTTTTGATTATGCAAACCCCTCTTGGAGTTATTTCTACCAAAAGCCTTCTCCAAAATAAGAAAAAATCTGGGTCAAGGTTAATTTCGTCTAATAGAATAAAGCTAGAAGACACTCCTATAGAGAACATCGAGGATGAACCATTTTCTGTTGCAAGGTGCCGTGTCTTTCAAAGAACAAATCTCAGCAAACAGAGAGCAGCGGATGAGGCCATTTCTCATCGAGCGAGAGGTCACTGCCATCATTCTTTAGACACAATACAGAGATTAAATGCATACAGGGTAATGGAGGAGCCTCCGGCATTTTCTTCTTTTAGAGAACGTTTGTACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCGGGTATACATGGATGGGGCCTCTTTGCACGTAGAAATATACAAGAAGGAGAAATGGTTCTTGAATATCGGGGTGAACAAGTGAGACGCAGCATTGCTGATCTGAGGGAGGCGCATTATAAGATAGAAGGCAAAGATTGCTATCTTTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGAAATATTGCCCGGCTTATCAACCATTCTTGTATGCCGAATTGCTATGCAAGAATTATGAGCGTCGGTGATGATGAGAGCCGTATTGTACTCATCGCCAAGACCAATGTTCCCGCCGGGGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAACCAGATGAGAACAAAGTGCCATGTTTATGTAAAGCTTCAAATTGCCGGAAATTCATGAACTAG 3297 0.4307 MIIKRNLKTQMPSLKRCKLGDSAGDDDDCSAARKKRKTNGYYPLNLLGDVAAGILPVSFHGLLGAGVSEKGFSASWCAEVSCSPVEAESKSKVGNSVTARMNRPAEEPRPPLVRTSRGRVQVLPSRFNDSVIENWRKEGKANSRDYSFEEELDSRKENSFRTPKSYNQNTRKGRNDNKIGYKSRKYLALYEEEEEVREDGPVRYRNLTRKYSTSSALNPKREQLIEHERRGFMYMEEVDITGNERFLKENGEKKDGLYGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYSANENQRDYAWVKHGMIFPFIDYVDRFQGQVELSYYNPSDFQVAIEEGFLADRGFTEKLIADINLAAGNTGYDETFPRGIQEAPGSKQYAGCHFLSQEFFDKRKDTRPCEVCGLDLPFKTSKKMKDSTPGGQFLCKTCARVCLIFLSLLTVFIQLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPKLKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKSRNWRTSVRVKGSMLPLEQWMLQLAEFHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETADIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPASGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQNKKKSGSRLISSNRIKLEDTPIENIEDEPFSVARCRVFQRTNLSKQRAADEAISHRARGHCHHSLDTIQRLNAYRVMEEPPAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREAHYKIEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDENKVPCLCKASNCRKFMN 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0947 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 528 IPR013083 -
Lele26g0947 1098 ProSiteProfiles Zinc finger PHD-type profile. 470 526 IPR019787 -
Lele26g0947 1098 ProSitePatterns Zinc finger PHD-type signature. 667 712 IPR019786 -
Lele26g0947 1098 SMART PostSET_3 1082 1098 IPR003616 -
Lele26g0947 1098 MobiDBLite consensus disorder prediction 93 120 - -
Lele26g0947 1098 SMART set_7 956 1079 IPR001214 GO:0005515
Lele26g0947 1098 Pfam SET domain 967 1072 IPR001214 GO:0005515
Lele26g0947 1098 Pfam PHD-finger 472 525 IPR019787 -
Lele26g0947 1098 Pfam PHD-zinc-finger like domain 720 832 - -
Lele26g0947 1098 CDD PHD_TCF19_like 473 523 - -
Lele26g0947 1098 SUPERFAMILY Tudor/PWWP/MBT 258 358 - -
Lele26g0947 1098 SUPERFAMILY SET domain 949 1095 IPR046341 -
Lele26g0947 1098 SMART PHD_3 666 713 IPR001965 -
Lele26g0947 1098 SMART PHD_3 472 524 IPR001965 -
Lele26g0947 1098 SMART PHD_3 777 833 IPR001965 -
Lele26g0947 1098 FunFam Histone-lysine N-methyltransferase 654 715 - -
Lele26g0947 1098 MobiDBLite consensus disorder prediction 143 160 - -
Lele26g0947 1098 FunFam Histone-lysine N-methyltransferase 930 1098 - -
Lele26g0947 1098 ProSiteProfiles PWWP domain profile. 265 334 IPR000313 -
Lele26g0947 1098 Gene3D SET domain 849 1098 IPR046341 -
Lele26g0947 1098 ProSiteProfiles SET domain profile. 956 1073 IPR001214 GO:0005515
Lele26g0947 1098 FunFam Histone-lysine N-methyltransferase 716 835 - -
Lele26g0947 1098 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1098 IPR025780 -
Lele26g0947 1098 ProSiteProfiles Zinc finger PHD-type profile. 664 715 IPR019787 -
Lele26g0947 1098 ProSiteProfiles Extended PHD (ePHD) domain profile. 718 833 IPR034732 -
Lele26g0947 1098 SUPERFAMILY FYVE/PHD zinc finger 665 729 IPR011011 -
Lele26g0947 1098 MobiDBLite consensus disorder prediction 143 178 - -
Lele26g0947 1098 Pfam PWWP domain 266 358 IPR000313 -
Lele26g0947 1098 CDD PHD_ATX3_4_5_like 666 712 IPR042011 -
Lele26g0947 1098 Pfam PHD-finger 679 713 - -
Lele26g0947 1098 PANTHER PHD FINGER PROTEINS 68 539 - -
Lele26g0947 1098 CDD ePHD_ATX3_4_5_like 721 832 IPR041955 -
Lele26g0947 1098 Gene3D - 260 363 - -
Lele26g0947 1098 SUPERFAMILY FYVE/PHD zinc finger 471 527 IPR011011 -
Lele26g0947 1098 CDD SET_SETD1-like 943 1094 - -
Lele26g0947 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 716 IPR013083 -
Lele26g0947 1098 ProSiteProfiles Post-SET domain profile. 1082 1098 IPR003616 -
Lele26g0947 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 835 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0947 Lele-ChrLele26 6117434 6125320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0947 667 832 C2H2 Transcription Factor Family AT3G14740 33.714 6.75e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele26g0947 zf-HC5HC2H_2 1.3e-27 CL0390