Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0886 ATGGCCGATATGTGCGGTACTCCTCCCTCTCTGCTCACCGCCTCCGCCATGCCTTCTGATTCCGACGATTTCTCCACCTTCTTCACCCACCTTCTCCATAACTCGCCCCCCTCTTCCGTCCTTTCCAAACACAAAACCTCACCTCCCCCGTGGCTCGCTCCGACAGTGGGGACCGCCGGGTTTGGCCATTCGGGTTCAGACTCGCCTCACAAAAATGGCAAGTCCGTTGGTTCTTTGGATGCAGTTTCTGATTCTTTCTACTTTTCTGATCCCTATGCTTACGTTCCGGGTGATGTGAAAGACGCTGCTGGAAATGAGTTCTTTCCGACTGGTATCGACGATTCTGATGAGAATACTTCCTTCAAAGAACATGGGATTTCGCCGGAGATTGATCCCGGCGATTTCATTTGTGCCGTTGAGAAGAATGCTGAGGCGTCGCAGACAAAGCGAGTCCCAGCACGTACTTCCTCAAAGAGGAGCAGAGCTGCAGAGGTTCATAATATGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTGCAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAGGCGATTGAATATTTGAAGCAACTTCAGTTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGAGGACTGCAACAATCTATGACACTGCCTCAGACAGGGTTGAATTTCGAGGACTCCAATGCATATCAGAATTCTTCTCGCGGAACTGCCTCTGCAGAATGCTTGGTGCAACCGGACTTCAGTCTTCCAAAGCATTGCAGCATCTCGGATCAACCTGTGATCATGCCCTCCATCACAAACATGGGCAACCCAGATACCTCATCTTCTGGTTTCAGATTTCAAGTTGCACAATTTGACCCTTCTACGTCATACAAGGTTGCAGTCTCTGATGGCGCACCACAGCTTCATTTGGACGCCACAAAGATTGAAAAGAGCGCATCTTCAGATAGGAACCTCGAAATTGCGGACCATGACACGCCATGTCAGGATGTTCTTTCTGGGAGTGATGACAGTTTGACCAACCTGTAG 1104 0.4828 MADMCGTPPSLLTASAMPSDSDDFSTFFTHLLHNSPPSSVLSKHKTSPPPWLAPTVGTAGFGHSGSDSPHKNGKSVGSLDAVSDSFYFSDPYAYVPGDVKDAAGNEFFPTGIDDSDENTSFKEHGISPEIDPGDFICAVEKNAEASQTKRVPARTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLMMRNGLSLHPMCLPGGGLQQSMTLPQTGLNFEDSNAYQNSSRGTASAECLVQPDFSLPKHCSISDQPVIMPSITNMGNPDTSSSGFRFQVAQFDPSTSYKVAVSDGAPQLHLDATKIEKSASSDRNLEIADHDTPCQDVLSGSDDSLTNL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0886 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Lele26g0886 367 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 303 IPR031066 -
Lele26g0886 367 Coils Coil 167 187 - -
Lele26g0886 367 CDD bHLH_AtPIF_like 161 223 - -
Lele26g0886 367 MobiDBLite consensus disorder prediction 146 175 - -
Lele26g0886 367 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Lele26g0886 367 FunFam Basic helix-loop-helix transcription factor 156 219 - -
Lele26g0886 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Lele26g0886 367 SMART finulus 167 216 IPR011598 GO:0046983
Lele26g0886 367 MobiDBLite consensus disorder prediction 56 76 - -
Lele26g0886 367 Gene3D - 156 220 IPR036638 GO:0046983
Lele26g0886 367 MobiDBLite consensus disorder prediction 339 367 - -
Lele26g0886 367 MobiDBLite consensus disorder prediction 157 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0886 Lele-ChrLele26 5672769 5675205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0886 161 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 86.842 2.22e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele26g0886 HLH 1.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0886 26 5672769 5675205 Lele27g1205 27 19078041 19080263 hybridization
Lele26g0886 26 5672769 5675205 Lele28g0867 28 5590110 5593115 hybridization