Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0885 ATGATTTGTATCCAATTTTGTGCTGTCAATGATCGAGCTGATCTTAACGGTACTGTAGTTCTTATTCCGCCTGGTTCATCTTATCCTGCAAATGAGTTGACTTTAATTGATGAAAGAGTTTTAATTGGTGGTGGATATGATGTCTGGCAATGCAACGATGATTTTGAAACATTGGATAATCGTTATGATGCAAATTTGGTTTTCGGTTTCTCGTGCTTCACTGTTGAGGTTCTCAATACATATTCACCCGCGTTGTTTAGAGTATCTTTTAGTGCAGCCCCAATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCTGAAACCTTAGAATTCAACTGTGGATCCACCTCAAGTAATCCTACTGTGGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTGCTGATAATCATAGTGATATACCTGAGTATTTACTTCCTTTGAGCGATATGAACCCACCATATATGAATTCTATAAACCATGAATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCAAGTTCTAGTAATACCCAGAATGAAACCAACAATAATCAGCAGAAAAGAGAACTTGGATGGACATCTCCAATTAGTGCAAGCGCTGCAGCTGGTCCAAGAGCAGAAGGAAGGCCCTTTGAACCAACTATTGTTCTTTCAGCTGACAATGTCAATTCCAGTCCTATGTATATGCACAACTCCAATTCTCACATGTCACCGAGTATCAACTTAAATGCTGGCTTGGCAGATGGTGGTGGTAATAACAGCCAGCATTTGGAGCATCCTAACTTGCACAAATCTAGTGGATCAGTAAATGAGCGTGTTTCACCTAGCATTGTTTCTGGTCCTTTTGCTCCTCCTCCTGGAAATAACAGCTTTGTGCTAGAAGGCACTGATGCTAGGGCCAGCTGTTCTCTAGACTTGCGCCGTGCATCTTGTAAAAGGAAGGCCATTGAAGAAAATGTTGGACCATCTATGGATGGCGGAAGTTCTAGTTCTAGTCAGCATACAGAAAGTAGTGCTTGGAACACTCTTCCAACTCAGGATGATGCTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAACAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAACCTTCCTGATTCAAATGATGCAGGGAGAACAGGAAGCTTCCACAGGAATCTCCGTTTGAGGATAAGTCCTTCAAGCCAACAAGATTCAATTCCTCCCCCTGCATTCTCTACTGGGAGCGTGATTAGGCATTCTAGTATGTCAACCTCTTCAATGGCACAAAGGTTCTCGCCTGTTGATAACTCCCTGGACTTGAGGGCTGCACCAATGGTAGATAATATAATTCCTCAAAGCCAGCCACTTGTGATCCATGTTCCTGCTTTACCAAGGAATATGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCACCAAGCCCAATCCTTTGTGCAGACAGGGATAACCAACCCCCGGAAGAATCAAACTCAAGAAGTATTTCTAGAAACATTTTTGGTCGCCCAGTGTTTGTACCTGCAACTGATTTAAGAAATCTTGTTCGAAATCCAACAATTAGAGCTTCAGGTAGTGCGAGTTTAAGCATGTCAGGAAATGTTGCTTCTTCTTCACGGGCTGGATCAAATTCAGCTATCAATCAGTCATCTTCCTCAACGTGGGTTTCTCGCCCTAGTCCTCCACAGTATCCACGTAGATTATCTGAATATGTTCGTCGATCATTGTTTTCTCCTCCTTCTGAGACTGCTGGAAGTCAAAATCCAAGCAATAATTATTCTTCTTTGCGCTCTGGTCCTACTGCCTCATCTGAAGCAAGGGTGCCATCATCTGGGGCTGGTGGCCAAGCACATCATCCATCACACCCAAGATCTTTGTGGATGGAGAGGCAAGCTGACGCTGAATTTGGAATTCCTTATTCATTGCGAAGTTTGGCTGCTGCTGGCGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTCCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGTGGCCTTCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCTGATATTCATGACCGACATAGGGATATGCGTCTTGATGTTGATAACATGTCTTACGAGGAATTGCTTGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGCGAAGAAACCGTGATGAAACTTCTGAAACAGAAGAAGTACTCAGCTGAAACAGGATCTCAGGATGAGGCTGAACCGTGCTGTGTCTGTCAGGAGGAGTATAATGAAGGAGATGATATTGGAACCCTTGATTGCGGGCATGATTACCACAAAGACTGTATCAAACATTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCCTGGCGTCGTTAATTGAAGCGGAATTCTCCGGTGCTTTGCTGCCTTGTCTTCTATCTATAGTGTTAGTGAATGCTCAAGCACCCGTTCATCTGACAAATCATAAATCCAATGATCTCGCACTTTATGGGACTGGTAATTGGTGTTGGGTGAAGGAAGCATTATTCATCTTTATGCTAGCTGATCAGGATTGGTGTTTTTTTACTTTTTACTGTATCTATCGAAAGCATTTTTACATTGCCGATGATGTTCAAAATCAATGTTTTGGTTCAATTGTACCAAAAAAAAAAAAGTTTTGGTTCAATTTATCATGCCTGACTATGCCAATGATGCTTGCTTATTGTTTGGATGACAAGCGTGTGGATTGCTCTGGTGCTTCTCACATTGCTACCATTCCATTTATTGCTTTGCCCCGGATTGTCAAACCAAAAATGAAGTGTCAAGTGTTTCATGTTAGTCTAGGTACATGCGATTAA 2898 0.4286 MICIQFCAVNDRADLNGTVVLIPPGSSYPANELTLIDERVLIGGGYDVWQCNDDFETLDNRYDANLVFGFSCFTVEVLNTYSPALFRVSFSAAPMQGQRGAIGSLPETLEFNCGSTSSNPTVDQQICWNNMRNPADNHSDIPEYLLPLSDMNPPYMNSINHEWQNSSGWSLGEPSSSNTQNETNNNQQKRELGWTSPISASAAAGPRAEGRPFEPTIVLSADNVNSSPMYMHNSNSHMSPSINLNAGLADGGGNNSQHLEHPNLHKSSGSVNERVSPSIVSGPFAPPPGNNSFVLEGTDARASCSLDLRRASCKRKAIEENVGPSMDGGSSSSSQHTESSAWNTLPTQDDAGSSLSRSASSEQVNARLGLGMGDEAPENLPDSNDAGRTGSFHRNLRLRISPSSQQDSIPPPAFSTGSVIRHSSMSTSSMAQRFSPVDNSLDLRAAPMVDNIIPQSQPLVIHVPALPRNMQSLRWNGSSSSSNSQSPSPILCADRDNQPPEESNSRSISRNIFGRPVFVPATDLRNLVRNPTIRASGSASLSMSGNVASSSRAGSNSAINQSSSSTWVSRPSPPQYPRRLSEYVRRSLFSPPSETAGSQNPSNNYSSLRSGPTASSEARVPSSGAGGQAHHPSHPRSLWMERQADAEFGIPYSLRSLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVMKLLKQKKYSAETGSQDEAEPCCVCQEEYNEGDDIGTLDCGHDYHKDCIKHWLMHKNLCPICKTTGLASLIEAEFSGALLPCLLSIVLVNAQAPVHLTNHKSNDLALYGTGNWCWVKEALFIFMLADQDWCFFTFYCIYRKHFYIADDVQNQCFGSIVPKKKKFWFNLSCLTMPMMLAYCLDDKRVDCSGASHIATIPFIALPRIVKPKMKCQVFHVSLGTCD 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0885 965 MobiDBLite consensus disorder prediction 591 622 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 325 363 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 166 195 - -
Lele26g0885 965 FunFam E3 ubiquitin-protein ligase MBR2 732 809 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 244 277 - -
Lele26g0885 965 Pfam Ring finger domain 764 805 IPR001841 -
Lele26g0885 965 MobiDBLite consensus disorder prediction 244 292 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 319 363 - -
Lele26g0885 965 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 309 809 IPR045191 GO:0061630
Lele26g0885 965 MobiDBLite consensus disorder prediction 536 576 - -
Lele26g0885 965 ProSiteProfiles Zinc finger RING-type profile. 764 805 IPR001841 -
Lele26g0885 965 MobiDBLite consensus disorder prediction 472 492 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 371 390 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 472 509 - -
Lele26g0885 965 SUPERFAMILY RING/U-box 763 807 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 590 634 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 400 419 - -
Lele26g0885 965 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 808 IPR013083 -
Lele26g0885 965 CDD RING-H2_TTC3 763 805 - -
Lele26g0885 965 MobiDBLite consensus disorder prediction 536 572 - -
Lele26g0885 965 SMART ring_2 764 804 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0885 Lele-ChrLele26 5664529 5669839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0885 94 811 C3H Transcription Factor Family AT2G15530 34.082 1.31e-80 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0885 26 5664529 5669839 Lele01g0846 01 4885758 4890800 CCT
Lele26g0885 26 5664529 5669839 Lele02g0823 02 5018610 5022267 CCT
Lele26g0885 26 5664529 5669839 Lele03g0839 03 4905029 4908464 CCT
Lele26g0885 26 5664529 5669839 Lele04g0844 04 5163602 5167247 CCT
Lele01g0861 01 4969567 4972831 Lele26g0885 26 5664529 5669839 CCT
Lele02g0841 02 5113822 5117121 Lele26g0885 26 5664529 5669839 CCT
Lele03g0856 03 4989269 4992533 Lele26g0885 26 5664529 5669839 CCT
Lele04g0858 04 5247846 5251121 Lele26g0885 26 5664529 5669839 CCT
Lele26g0885 26 5664529 5669839 Lele27g1206 27 19083783 19087627 hybridization
Lele26g0885 26 5664529 5669839 Lele28g0866 28 5582052 5586724 hybridization