Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0879 ATGGCTCTGATGGCTTGTGTCGGCCATGTTTGGATTTATCTTAAAGGAAGCTCAACGTGGCGGCCGTGCCCGGTCGACAGACTAGCAGCCAAGTTTGATTACTACCACAAAAGTCGGTGGGTAGGTACAGTAATTAACATGGAAGAAAGAGACTGTTGTTCGAGGGATTCCACGATCACGACGAGCAGAAGCAGCCCGGAGAAGCGGAAGCCACAGAGGCAACACCACAAAGCGGCGAAGGACAAGCCATACAGAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATCAGAGAACCCAACAAGAGGTCAAGGATCTGGCTCGGTTCTTACACAACACCCATCGCCGCCGCACGCGCATACGACACCGCCGTTTATTACCTCCGAGGCCCTTCCGCTTCCCTCAACTTCCCCGAACTGTTGTTCCAAGATGACGACGCCCTCACCCGCGGCGACACTTCCGCCGATTCCATACGCAAGAAAGCCACCGAAGTCGGCGCTAGAGTCGACGCCCTCCAAACCGCCATTCACTCCTCCTCTCCCTCCACCAGTTCTACCCAAACCACCTCCGACAAACCCGACTTGAATGAGTACCCGCAACCCGAAGACTCCATCGAGGATTAG 630 0.554 MALMACVGHVWIYLKGSSTWRPCPVDRLAAKFDYYHKSRWVGTVINMEERDCCSRDSTITTSRSSPEKRKPQRQHHKAAKDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVYYLRGPSASLNFPELLFQDDDALTRGDTSADSIRKKATEVGARVDALQTAIHSSSPSTSSTQTTSDKPDLNEYPQPEDSIED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0879 209 MobiDBLite consensus disorder prediction 56 82 - -
Lele26g0879 209 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Lele26g0879 209 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Lele26g0879 209 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Lele26g0879 209 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Lele26g0879 209 MobiDBLite consensus disorder prediction 175 197 - -
Lele26g0879 209 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Lele26g0879 209 Gene3D AP2/ERF domain 83 141 IPR036955 GO:0003700|GO:0006355
Lele26g0879 209 Pfam AP2 domain 84 132 IPR001471 GO:0003700|GO:0006355
Lele26g0879 209 MobiDBLite consensus disorder prediction 172 209 - -
Lele26g0879 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 65 206 - -
Lele26g0879 209 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Lele26g0879 209 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0879 Lele-ChrLele26 5623089 5624018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0879 56 193 AP2-EREBP Transcription Factor Family AT1G46768 61.972 6.34e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele26g0879 AP2 2.8e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0879 26 5623089 5624018 Lele27g1212 27 19131403 19131894 hybridization
Lele26g0879 26 5623089 5624018 Lele28g0859 28 5537067 5537558 hybridization