Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0838 ATGGAGACACTTGGAGTCATCCCTGATGCGGAAATGAGTTGCTTTCGAGGAATATTTGCCTCAGAAGAGCATGATTACTCGCCAAAATTTCTTGGCCAGAGCTCACTTCTGCTCGGGGAACATGATCGAATGCCCATTGGAATAGAATCTGCATTTTGCTCTGCTCCTGAAGCTAGGGAAAATGAGTGCATGTTTAATTCTTTAGATGCTCTCAACCTAGATATGCAGTTTATTTCTCAAGAAAGTAGTTTCATTAGTAACTGTAGTGGCGATGCTTTCTTTGTTGCCAACCCGGGTCTTATGAACTACTATCTCAATGATCCTAATGAGGTTCTAGCAAATGATGCCTGCATGTTCATGAATGTTTGCATGATGCATGAGAAAGACACTGGCACTTTCATCCCATCACCAGGAAACGTTTTGGTGGACGAAACTGTTGGCTTTAATGAAGACAGGAGACGGGACATATTGGAGAATTCCAATCAAAGTCAAGCTGAGTTCTCTACTTTTGCTGACGAACAAATGCACCTGAAAAGGAAGTTTGATGTGCGAGAACTGGAGGCCTCAGCAGAAGATAAAATAAACATCAGCTCATCTGAGAACCAAAAGAAGAAACCTCGTGTTTCAAGAGATGTTCAAAAGAGTAAGAAGAATGCACAGCTAAAGAAGAACCAAAAGGTTGCAGGAAGTGGCTATGGGGCAGAAGAGACTGATACAGGATTACATGGACAGAGTTGTAGTAGTTACAGCTTAGAGGACGATAATGCTTCTCAGGAAAATAGTGGAGGAGCTTCCATTGAGTGTAAATCACTTGTGACTCACAACACAAATGGGAAGACCAGAGCCAGTAGAGGATCAGCAACAGATCCCCAGAGCCTTTATGCCAGGAAAAGGAGGGAGAGAATAAATGAACGACTGAGAATCCTACAGAATCTTGTTCCAAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCATTACGTGGAATTTTTGCAGCTTCAAATTAAGCTTTTAAGTTCTGATGACCTGTGGATGTATGCTCCGATTGCTTATAACGGAGTTGACATTGGATTGAATCTGAGCCGCAAGATTTCACCGACAACGTGA 1119 0.4236 METLGVIPDAEMSCFRGIFASEEHDYSPKFLGQSSLLLGEHDRMPIGIESAFCSAPEARENECMFNSLDALNLDMQFISQESSFISNCSGDAFFVANPGLMNYYLNDPNEVLANDACMFMNVCMMHEKDTGTFIPSPGNVLVDETVGFNEDRRRDILENSNQSQAEFSTFADEQMHLKRKFDVRELEASAEDKINISSSENQKKKPRVSRDVQKSKKNAQLKKNQKVAGSGYGAEETDTGLHGQSCSSYSLEDDNASQENSGGASIECKSLVTHNTNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVEFLQLQIKLLSSDDLWMYAPIAYNGVDIGLNLSRKISPTT 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0838 372 FunFam Basic helix-loop-helix transcription factor 287 344 - -
Lele26g0838 372 SMART finulus 292 341 IPR011598 GO:0046983
Lele26g0838 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 351 IPR036638 GO:0046983
Lele26g0838 372 MobiDBLite consensus disorder prediction 240 266 - -
Lele26g0838 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 149 358 - -
Lele26g0838 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 335 IPR011598 GO:0046983
Lele26g0838 372 MobiDBLite consensus disorder prediction 192 266 - -
Lele26g0838 372 MobiDBLite consensus disorder prediction 192 218 - -
Lele26g0838 372 CDD bHLH_AtIND_like 287 349 - -
Lele26g0838 372 Gene3D - 288 349 IPR036638 GO:0046983
Lele26g0838 372 Pfam Helix-loop-helix DNA-binding domain 296 336 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0838 Lele-ChrLele26 5407073 5408655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0838 252 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 76.271 8.60e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele26g0838 HLH 7.9e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0838 26 5407073 5408655 Lele28g0825 28 5316679 5318261 hybridization