Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0830 ATGTATGGACGATTCCTGAAGTGTGGCTTTCTGTTAGATAGGAATTTTGTATGGAGTTGTCTAAGCTACTTTCGGATCTCCGCTTTCCGGCGTGCATTGAGAAGTGGTTTTGTTGCATTGTTTGTGAGGGAAAGATCCAAACTCCTCCGATTGTTTTCCAAGATGTTGTGTGCTTGTTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACAGTCGCCGGAATCCATCGCAACAAGAGATTTCTCGGCCAGTGGACTCTCTTCGAGGACTGGGGATTGGGAATCTAAATTTGAGGACACCCAAGTAGATGAAGCTGAATCTACTCTTAAAGAAGCTCTCTCGTTGAACTACGAGGAAGCTAGGGCTTTGTTAGGGAGGCTTGAATTCCATAGAGGGAATTTCGACGCTGCCCTTCAAGTATTTCAGGGGATTGACATTAAAAGTTTAACTCCAAGGATGATTAGGGCCATTTCTGAGAGAACCAAGCAAATAAAACCACGTTCTAAGGCCGATCACGTGCTTCCCTCTATAATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCTATTCTGCTTAAAGCTAAATCGTTGGAGGCACTTGGACGCTACACTGAGGCTGCAAAGGAATGCAAAAGAATTCTGGACACGGTTGATTCTGCGCTACCAGCTGGAATGCCTCAAGGTTTTGGCGAAGATTGTAAACTGCAAGAGATGTTCCACCGAGCATTGGAGTTGCTTCCAAAACTTTGGACCAATGCAGGGTTACTAGATGAAGCTATCACTGCATACTGGCGGGCTCTGATCAAACCATGGAATTTGGAGCCACAAAGGCTGGCCACCATGCAGAAAGATTTAGCTGTTACACTCCTTTATGGTGGTGTGGAAATGAGCCTTCCATCACATTTGCATGTGTGGGGTGTAACAACGCCAAAGACTAACGTGGAAGAAGCTGTACTCTTGTTAATGATACTCATGAGAAAGATACTAGTTCAGGAAATCGAATGGGATTCTGAACTATTAGATCATCTTGCATTTGCACTTTCAATTACGGGGATGTTTGAATTATTGGCAGATCATGTTGAGCAGATCCTTCCAGGTGTTTATAGTCGTGCTGAGAGGTGGTACTTTCTTGCCCTTTGTTATAGTGCTGCAGGACAGAATGAAACAGCATTGAACCTTCTAATGAAAGTTTGTGGTAGTTCTGAGGCAAAGCATATGCCCCATTTTCCTTCCTTTTTATTAGGAGCAAAACTGTGTTCCCGAGATCCCAACCATTCCCATGAAGGCATTAAACTATCACGGAAAGTGATTGATCTAGCCAAGCATCAATGTGAGCACTTTCAGGGTCAAGGTCACAGATTTCATGGTGTTTGCTATGGGGCTGCGGCTAGAATTTCTGTACTGGATTCTGAAAGAGTTATATGTCAAAGAGAGTCTTTGAATTCCTTAAACCAAGCTGCTGTAATTGGAAATTGGGACCCTGAAGTGATATTCAGCCTGGGATTGGAAAATGCTGTTCAAAGAAATCTGGTGGCAGCTTATGAGAACGCAGTTATGTACTCAGATATGGTTGTTGGTAGCTCGGGAAAAGGTTGGCAACTTTTAGCACTCATAGTATCCGCACAGCACCGGTTCAAGGATGCTGAGACTCTAGTTGATTTTGCTTTAGATGAATCTGGAAGGACGGATCAATTACAACTTTTAAGATTGAAAGCTGTACTTCAAATTTCTAAGCAGCAACCTAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCACTGATTCAAGCACGAAAGGATTTTTGGCTTGAATATAAGACCATCGATCCAGCAAACACGCTGAGACATGAGGAATTAACAGAAAAAAAATTAGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCCGATCTAGGTGCCTTGCTTGACGCAAAAACTTGTGTAGACAAAGCCCAGTTGATAGAATTCTTTTCTCCCAGAAGTTGGCATATTACAGGGGAATTGTTTGAAGCTAAATCATTATACAAGGAGGCCCTTGTTTCTTACACAATTGCGTTGTCGATAGAACCAGATTATGTTCCCAGCATCATTTCAACTGCAGAATTGTTGTTAAAAGCTGGTATGAAATCACTTCCAATCGCAAGAAGCTTTTTAATGAACGCTCTGCGGTTGGAACCCACAAACCATGATGCGTGGTTCAACCTTGGATTGATTTCAAAAATGGAAGGTTCATTAGAGCAAGCGGCAGATTTCTTCCAAGCTGCATATGAGCTAAAGCTTTCAGCTCCAGTTGAAAGATTTGTGCGAGTAATTGAGGCTTCGAGATGA 2331 0.4303 MYGRFLKCGFLLDRNFVWSCLSYFRISAFRRALRSGFVALFVRERSKLLRLFSKMLCACSGEQFKFEEPPQSPESIATRDFSASGLSSRTGDWESKFEDTQVDEAESTLKEALSLNYEEARALLGRLEFHRGNFDAALQVFQGIDIKSLTPRMIRAISERTKQIKPRSKADHVLPSIMSMHSVSLLLEAILLKAKSLEALGRYTEAAKECKRILDTVDSALPAGMPQGFGEDCKLQEMFHRALELLPKLWTNAGLLDEAITAYWRALIKPWNLEPQRLATMQKDLAVTLLYGGVEMSLPSHLHVWGVTTPKTNVEEAVLLLMILMRKILVQEIEWDSELLDHLAFALSITGMFELLADHVEQILPGVYSRAERWYFLALCYSAAGQNETALNLLMKVCGSSEAKHMPHFPSFLLGAKLCSRDPNHSHEGIKLSRKVIDLAKHQCEHFQGQGHRFHGVCYGAAARISVLDSERVICQRESLNSLNQAAVIGNWDPEVIFSLGLENAVQRNLVAAYENAVMYSDMVVGSSGKGWQLLALIVSAQHRFKDAETLVDFALDESGRTDQLQLLRLKAVLQISKQQPKQAIETYRILLALIQARKDFWLEYKTIDPANTLRHEELTEKKLEMEAWQDLATIYADLGALLDAKTCVDKAQLIEFFSPRSWHITGELFEAKSLYKEALVSYTIALSIEPDYVPSIISTAELLLKAGMKSLPIARSFLMNALRLEPTNHDAWFNLGLISKMEGSLEQAADFFQAAYELKLSAPVERFVRVIEASR 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0830 776 Gene3D Tetratricopeptide repeat domain 311 594 IPR011990 GO:0005515
Lele26g0830 776 PANTHER PROTEIN NPG1 55 768 IPR043376 -
Lele26g0830 776 Gene3D Tetratricopeptide repeat domain 712 768 IPR011990 GO:0005515
Lele26g0830 776 SMART tpr_5 730 763 IPR019734 GO:0005515
Lele26g0830 776 SMART tpr_5 626 659 IPR019734 GO:0005515
Lele26g0830 776 SMART tpr_5 529 562 IPR019734 GO:0005515
Lele26g0830 776 SMART tpr_5 660 693 IPR019734 GO:0005515
Lele26g0830 776 SMART tpr_5 371 404 IPR019734 GO:0005515
Lele26g0830 776 SMART tpr_5 187 220 IPR019734 GO:0005515
Lele26g0830 776 SMART tpr_5 565 598 IPR019734 GO:0005515
Lele26g0830 776 MobiDBLite consensus disorder prediction 75 91 - -
Lele26g0830 776 MobiDBLite consensus disorder prediction 68 92 - -
Lele26g0830 776 Gene3D Tetratricopeptide repeat domain 603 711 IPR011990 GO:0005515
Lele26g0830 776 SUPERFAMILY TPR-like 621 760 IPR011990 GO:0005515
Lele26g0830 776 Gene3D Tetratricopeptide repeat domain 94 291 IPR011990 GO:0005515
Lele26g0830 776 ProSiteProfiles TPR repeat profile. 660 693 IPR019734 GO:0005515
Lele26g0830 776 SUPERFAMILY TPR-like 478 653 IPR011990 GO:0005515
Lele26g0830 776 SUPERFAMILY TPR-like 101 397 IPR011990 GO:0005515
Lele26g0830 776 Pfam Tetratricopeptide repeat 101 143 - -
Lele26g0830 776 ProSiteProfiles TPR repeat profile. 730 763 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0830 Lele-ChrLele26 5326974 5330059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0830 55 769 Calmodulin-binding Proteins AT1G27460 59.527 0.0 864
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0815 01 4720555 4731244 Lele26g0830 26 5326974 5330059 CCT
Lele02g0786 02 4807814 4811707 Lele26g0830 26 5326974 5330059 CCT
Lele03g0805 03 4720593 4724580 Lele26g0830 26 5326974 5330059 CCT
Lele04g0804 04 4941508 4951984 Lele26g0830 26 5326974 5330059 CCT
Lele26g0830 26 5326974 5330059 Lele27g1260 27 19419739 19423376 hybridization
Lele26g0830 26 5326974 5330059 Lele28g0815 28 5238473 5241785 hybridization