Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0828 ATGTTGGTAATTATATACTCTAATACAGAAGCTTTGACCAGAAACTCAAACCGCCCTTTTCGTTCATGTGCAGACACTGTTCATAAACTAAGCGCAGAGATCTCCATGATTCAATTTCGTAAAGTTATTTCATTCCCTAACCTAACAAAAGCTGTCAAGCTTAAAAATGGAACTTCCTCAATCCTTACAACTGAAGAAAATATATGGGTTAGGTGCCATTATCTGAATTCTGAAAAGATATTTGAGGATGAGAGCAGGCTAGACACATTTGCCATTCTCTTTTTCTCAGATCATCATCTTCATTGCTCTGTTGAGGCAGAAACTCAAAACATTCAGAGAATCATCTGCTTGCTTCTTCTACTGGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAACTAACAGCAGATAACCGAGTGTACCATAAAGCTTGCTTCCGATGCCATCACTGCAAAGGAACCCTCAAGCTAAGCAACTACAATTCTTTTGAGGGAGTTCTTTATTGCAAGCCCCACTTCGACCAAATTTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCAAAACCAGAAAAACAAATTGACACTGAGAAACCTGCAGTAACCAAAGCCTCAAGTTTGTTTGGCGGTACCAGAGAAAAATGTACTGGTTGTCAGAAAACAGTTTACCCAACTGAGAAGGTTACTGTAAACGGAACACCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGATGTGTTATAAGTCCTTCGAACTACATTGCGCATGAGGGTAAGCTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGAAATTTAAGCCAACTTGAAGGTGACCATGACAAGAGTGAAACAAATGACAAGATCATCAATGGGGAAGAAGTTGCTACCTAG 942 0.4002 MLVIIYSNTEALTRNSNRPFRSCADTVHKLSAEISMIQFRKVISFPNLTKAVKLKNGTSSILTTEENIWVRCHYLNSEKIFEDESRLDTFAILFFSDHHLHCSVEAETQNIQRIICLLLLLGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQIFKRTGSLDKSFEGTPKIAKPEKQIDTEKPAVTKASSLFGGTREKCTGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHDKSETNDKIINGEEVAT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0828 313 MobiDBLite consensus disorder prediction 289 305 - -
Lele26g0828 313 SMART lim_4 126 178 IPR001781 -
Lele26g0828 313 SMART lim_4 226 278 IPR001781 -
Lele26g0828 313 CDD LIM2_SF3 227 287 - -
Lele26g0828 313 PANTHER OS06G0237300 PROTEIN 77 211 IPR045268 -
Lele26g0828 313 ProSiteProfiles LIM domain profile. 225 285 IPR001781 -
Lele26g0828 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 252 - -
Lele26g0828 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 193 - -
Lele26g0828 313 FunFam LIM domain and actin-binding 1 121 191 - -
Lele26g0828 313 Pfam LIM domain 127 180 IPR001781 -
Lele26g0828 313 Pfam LIM domain 227 281 IPR001781 -
Lele26g0828 313 ProSitePatterns LIM zinc-binding domain signature. 127 161 IPR001781 -
Lele26g0828 313 CDD LIM1_SF3 123 185 - -
Lele26g0828 313 Gene3D Cysteine Rich Protein 222 291 - -
Lele26g0828 313 Gene3D Cysteine Rich Protein 122 191 - -
Lele26g0828 313 FunFam LIM domain and actin-binding 1 221 291 - -
Lele26g0828 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 292 - -
Lele26g0828 313 MobiDBLite consensus disorder prediction 289 313 - -
Lele26g0828 313 ProSiteProfiles LIM domain profile. 125 185 IPR001781 -
Lele26g0828 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0828 Lele-ChrLele26 5314101 5317763 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele26g0828 LIM 8.9e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0828 26 5314101 5317763 Lele01g0804 01 4664450 4665773 CCT
Lele26g0828 26 5314101 5317763 Lele03g0797 03 4665025 4666476 CCT
Lele26g0828 26 5314101 5317763 Lele04g0797 04 4886545 4887950 CCT
Lele26g0828 26 5314101 5317763 Lele27g1262 27 19436313 19438919 hybridization
Lele26g0828 26 5314101 5317763 Lele28g0813 28 5226086 5228907 hybridization