Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele26g0828 | ATGTTGGTAATTATATACTCTAATACAGAAGCTTTGACCAGAAACTCAAACCGCCCTTTTCGTTCATGTGCAGACACTGTTCATAAACTAAGCGCAGAGATCTCCATGATTCAATTTCGTAAAGTTATTTCATTCCCTAACCTAACAAAAGCTGTCAAGCTTAAAAATGGAACTTCCTCAATCCTTACAACTGAAGAAAATATATGGGTTAGGTGCCATTATCTGAATTCTGAAAAGATATTTGAGGATGAGAGCAGGCTAGACACATTTGCCATTCTCTTTTTCTCAGATCATCATCTTCATTGCTCTGTTGAGGCAGAAACTCAAAACATTCAGAGAATCATCTGCTTGCTTCTTCTACTGGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAACTAACAGCAGATAACCGAGTGTACCATAAAGCTTGCTTCCGATGCCATCACTGCAAAGGAACCCTCAAGCTAAGCAACTACAATTCTTTTGAGGGAGTTCTTTATTGCAAGCCCCACTTCGACCAAATTTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCAAAACCAGAAAAACAAATTGACACTGAGAAACCTGCAGTAACCAAAGCCTCAAGTTTGTTTGGCGGTACCAGAGAAAAATGTACTGGTTGTCAGAAAACAGTTTACCCAACTGAGAAGGTTACTGTAAACGGAACACCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGATGTGTTATAAGTCCTTCGAACTACATTGCGCATGAGGGTAAGCTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGAAATTTAAGCCAACTTGAAGGTGACCATGACAAGAGTGAAACAAATGACAAGATCATCAATGGGGAAGAAGTTGCTACCTAG | 942 | 0.4002 | MLVIIYSNTEALTRNSNRPFRSCADTVHKLSAEISMIQFRKVISFPNLTKAVKLKNGTSSILTTEENIWVRCHYLNSEKIFEDESRLDTFAILFFSDHHLHCSVEAETQNIQRIICLLLLLGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQIFKRTGSLDKSFEGTPKIAKPEKQIDTEKPAVTKASSLFGGTREKCTGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHDKSETNDKIINGEEVAT | 313 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele26g0828 | 313 | MobiDBLite | consensus disorder prediction | 289 | 305 | - | - | |
Lele26g0828 | 313 | SMART | lim_4 | 126 | 178 | IPR001781 | - | |
Lele26g0828 | 313 | SMART | lim_4 | 226 | 278 | IPR001781 | - | |
Lele26g0828 | 313 | CDD | LIM2_SF3 | 227 | 287 | - | - | |
Lele26g0828 | 313 | PANTHER | OS06G0237300 PROTEIN | 77 | 211 | IPR045268 | - | |
Lele26g0828 | 313 | ProSiteProfiles | LIM domain profile. | 225 | 285 | IPR001781 | - | |
Lele26g0828 | 313 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 220 | 252 | - | - | |
Lele26g0828 | 313 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 153 | 193 | - | - | |
Lele26g0828 | 313 | FunFam | LIM domain and actin-binding 1 | 121 | 191 | - | - | |
Lele26g0828 | 313 | Pfam | LIM domain | 127 | 180 | IPR001781 | - | |
Lele26g0828 | 313 | Pfam | LIM domain | 227 | 281 | IPR001781 | - | |
Lele26g0828 | 313 | ProSitePatterns | LIM zinc-binding domain signature. | 127 | 161 | IPR001781 | - | |
Lele26g0828 | 313 | CDD | LIM1_SF3 | 123 | 185 | - | - | |
Lele26g0828 | 313 | Gene3D | Cysteine Rich Protein | 222 | 291 | - | - | |
Lele26g0828 | 313 | Gene3D | Cysteine Rich Protein | 122 | 191 | - | - | |
Lele26g0828 | 313 | FunFam | LIM domain and actin-binding 1 | 221 | 291 | - | - | |
Lele26g0828 | 313 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 253 | 292 | - | - | |
Lele26g0828 | 313 | MobiDBLite | consensus disorder prediction | 289 | 313 | - | - | |
Lele26g0828 | 313 | ProSiteProfiles | LIM domain profile. | 125 | 185 | IPR001781 | - | |
Lele26g0828 | 313 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 121 | 152 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele26g0828 | Lele-ChrLele26 | 5314101 | 5317763 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Lele26g0828 | LIM | 8.9e-12 | CL0167 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele26g0828 | 26 | 5314101 | 5317763 | Lele01g0804 | 01 | 4664450 | 4665773 | CCT | |
Lele26g0828 | 26 | 5314101 | 5317763 | Lele03g0797 | 03 | 4665025 | 4666476 | CCT | |
Lele26g0828 | 26 | 5314101 | 5317763 | Lele04g0797 | 04 | 4886545 | 4887950 | CCT | |
Lele26g0828 | 26 | 5314101 | 5317763 | Lele27g1262 | 27 | 19436313 | 19438919 | hybridization | |
Lele26g0828 | 26 | 5314101 | 5317763 | Lele28g0813 | 28 | 5226086 | 5228907 | hybridization |