Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0812 ATGGATTCTGATCGAGCCAAGCTCTTCGTGGGTGGCATTTCCCGGGACACTACCGAAGATGTTTTGAAAGATCACTTCGCCAAGTACGGCTCTGTTTTGGGTTCCACAATTTCGATGGACCGCAACACCAGAATTCCCCGAGGCTTTGGCTTCGTTAGGTTCTCCAACGTTTCCGCGGCTGATAAAGCCCTTCAAGACACGCATGTCATACTTGGAAGAACGGTAGAAGTGAAGAAAGCAATACCTAGAAGTGAACATCAACATCAAAACCTACCCCAGAGTAGAGGGACGAGTAACTGTAGTAATTATGACAGTAGCGGCGATCACTTTAGCACCAAAAAGGTATTTGTAGGAGGCCTATCAGCTGGTATATCGGAGGACGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGATTTGGTTTCATTACTTTTGATTCAGAAGAATCTGTTGAAAGTGTGATGATGAAAAGCTTCCATGACTTGAATGGTAGGCAGGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAATAATGGTTATGAAGGTGTTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAAATTCCCCTCAGTTTAGTCCTAGGTACATTCCCCCTGCATTTGCACCTCTTCCCTGGTACGGTGGCGATGGATTGTATTTTTATGGATCTAACATGTATGGTTGCTGGCTCCCTATGGGAGGGTATGGTTGCAATGGATCTGCAGTTCCATTTGATGTTCCTAGGAATTTCTGGTATGGTCCTACGGTAGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCTCCAATCCAAGCATATGGGAGCGTTAGGGGTGTACTCGGTACCGAAACAAGGGGCTACAATGGCATCATGGGATCTGCAGCAAGTTTTAAATTCAATCAGGTTTTAAGTGGCAATGGATTTCTACCAGCTGATGTTATGTCATCATCTCCTAAGATTGAAGAGTTAAAACAGGAAGTGGAGTCTCTAAGTTTGAAAGAAAGGAATGGGTTGGTCTATTCTTTGATGGATGGTGGAAGAGTTGGTCACTCTTCTTCTGATCTGTATAAATTTGCTTAG 1140 0.4456 MDSDRAKLFVGGISRDTTEDVLKDHFAKYGSVLGSTISMDRNTRIPRGFGFVRFSNVSAADKALQDTHVILGRTVEVKKAIPRSEHQHQNLPQSRGTSNCSNYDSSGDHFSTKKVFVGGLSAGISEDEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMMKSFHDLNGRQVEVKRAVPKDGNNGYEGVNRMRYKNGRGAPKNSPQFSPRYIPPAFAPLPWYGGDGLYFYGSNMYGCWLPMGGYGCNGSAVPFDVPRNFWYGPTVATAQTCQVPYASPIQAYGSVRGVLGTETRGYNGIMGSAASFKFNQVLSGNGFLPADVMSSSPKIEELKQEVESLSLKERNGLVYSLMDGGRVGHSSSDLYKFA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0812 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Lele26g0812 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele26g0812 379 SUPERFAMILY RNA-binding domain, RBD 106 210 IPR035979 GO:0003676
Lele26g0812 379 Gene3D - 1 91 IPR012677 -
Lele26g0812 379 MobiDBLite consensus disorder prediction 86 104 - -
Lele26g0812 379 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele26g0812 379 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lele26g0812 379 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 108 192 - -
Lele26g0812 379 SUPERFAMILY RNA-binding domain, RBD 3 106 IPR035979 GO:0003676
Lele26g0812 379 MobiDBLite consensus disorder prediction 82 104 - -
Lele26g0812 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Lele26g0812 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lele26g0812 379 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 310 - -
Lele26g0812 379 Gene3D - 110 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0812 Lele-ChrLele26 5188722 5190236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0812 8 263 Eukaryotic Initiation Factors Gene Family AT4G34110 25.758 1.31e-15 76.6