LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g0801	ATGGGTTTTCCCGATATGTCTAATACGGGTCTCCGTCTCGGTCTTGGTCTCGGTCTTCACCAGCAGCCAGAGGATTGCCGCAGAGAAATCCCTCACAAGAAACGCGAGGATCCGTACAAATGTGACCCGAAGCTGTACCCGTCTCTTACTTTAGGACCGCCGCCTGATGATCAAGAGGTGAATGAACAGCTTCTTCCTTCCAAGACTGAATCTGTTCATTTCCGTGCAATTGCGTCTTCTTCTCCCAGCGCCGCCTCTTCCTTCTCCAACTCATCCAGCATCAAGAGGGAGAATAAGGACTTTGTCGGCGACGAGCTTGATTTGGAAGTAGACAACAGTGTTAATAATCCTTCCAAGGTAGGCCTCGACGTAGACGAAGAAGACGGTAATCCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCCGCTGTTTTAGAGGATAGCTTCAAAGAGCACTCCACTCTCAATCCAAAGCAGAAGCAAGAATTGGCGAGGAAGTTAAACCTGCGTGCGAGACAAGTAGAGGTTTGGTTTCAAAACCGGAGAGCAAGGACAAAACTGAAACAAACGGAAGTTGACTGCGAGTTACTCAAGAAGTGCTGCGAAACGCTAACGGAAGAGAACAGGAGACTGCAAAAGGAGTTGCAAGATCTGAGATCAATGAAAACCACGTCGCAGGGACCCTTGTATATGCAGCTTCCGGCAGCCACCCTCACCTTATGCCCTTCCTGTGAGAGAATTTGCGGCGGAGGCGGTGGCACCACCGCCAACGGCTCTCCCGCCACCACCGCCTTCCTTATCGGATCAAAGGCCCATCACTTGTATAAAAGCAACTATCCGTTCACCCACTCATCCGCAGCTTGCTAG	867	0.504	MGFPDMSNTGLRLGLGLGLHQQPEDCRREIPHKKREDPYKCDPKLYPSLTLGPPPDDQEVNEQLLPSKTESVHFRAIASSSPSAASSFSNSSSIKRENKDFVGDELDLEVDNSVNNPSKVGLDVDEEDGNPRKKLRLTKEQSAVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENRRLQKELQDLRSMKTTSQGPLYMQLPAATLTLCPSCERICGGGGGTTANGSPATTAFLIGSKAHHLYKSNYPFTHSSAAC	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g0801	288	CDD	homeodomain	131	189	IPR001356	GO:0003677
	Lele26g0801	288	Gene3D	-	125	193	-	-
	Lele26g0801	288	MobiDBLite	consensus disorder prediction	22	42	-	-
	Lele26g0801	288	Coils	Coil	194	221	-	-
	Lele26g0801	288	ProSiteProfiles	'Homeobox' domain profile.	128	188	IPR001356	GO:0003677
	Lele26g0801	288	ProSitePatterns	'Homeobox' domain signature.	163	186	IPR017970	GO:0000981\|GO:0006355
	Lele26g0801	288	Pfam	Homeobox associated leucine zipper	188	222	IPR003106	GO:0006355\|GO:0043565
	Lele26g0801	288	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	11	262	-	-
	Lele26g0801	288	SMART	HOX_1	130	192	IPR001356	GO:0003677
	Lele26g0801	288	FunFam	Homeobox-leucine zipper protein 18	118	193	-	-
	Lele26g0801	288	Pfam	Homeodomain	132	186	IPR001356	GO:0003677
	Lele26g0801	288	MobiDBLite	consensus disorder prediction	112	139	-	-
	Lele26g0801	288	SMART	halz	188	233	IPR003106	GO:0006355\|GO:0043565
	Lele26g0801	288	SUPERFAMILY	Homeodomain-like	123	189	IPR009057	-
	Lele26g0801	288	MobiDBLite	consensus disorder prediction	1	68	-	-
	Lele26g0801	288	MobiDBLite	consensus disorder prediction	121	139	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g0801	Lele-ChrLele26	5089404	5090545	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g0801	1	288	Homeobox Transcription Factor Family	AT4G37790	51.020	1.19e-68	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele26g0801		Homeodomain	3.3e-17	CL0123