Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0800 ATGGAGGAATATAATAATAATCTGAGCGAAAACAATGGTGTAAGGGCTAATTTCTTGTACTCTTCGGGTGGTATTGGGTACGGAAGAAGTAGCAGCGGTGGTGGTGGTTCGAGTGTTGCTGCTCATCAGTTGCCCATCAATACTTTTCATCTTCAGCCCGCTGCTTCTGACTGCTTTCATCAATCCGATCAGCCTCATCCCACCGTGAAAACCGAGGCCAACACCTCACACCATGCTCAGATTTTTCAGTATCCTCTTTTCAGAGGAAATCTTCACATGATGCACCACCAAGGAGCAGCTGGTGGAGACAGCTCCAACGAGGTTGAAGCTATCAAGGCGAAAATCATTGCTCATCCTCAGTATTCCAATCTTCTACAAGCTTACATGGATTGCCAAAAGGTGGGAGCTCCACCGGAGGTGTTGGCGCGTCTGGCTGCTGTTCGCCAGGAATTTGAGGCACGGCAGCGATCTTCATCCACTTCCAGGGAAGTTTCGAAGGATCCTGAACTGGACCAATTCATGGTGCGATGTGTATTTTGCTTTGTTGTGAATGATCATCAGGAAGCTTATTATGACATGCTTGTCAAGTATCGAGAGGAATTGACGAGGCCTATACAAGAAGCCATGGATTTCATGCGCAGGATCGAAAATCAACTCAATATGCTTTGCAATGGATCCGTCCGTATCTTCTCTGATGATAAGTGTGAAGGGTTTGGTTCGTCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTGCCAGAGATTGATCCCAGAGCTGAAGACCGTGAACTTAAGAACCACTTACTGAGGAAGTATAGCGGTTACTTAAGCAGCCTGAAGCAAGAACTGTCCAAGAAAAAGAAGAAAGGAAAACTGCCCAAAGATGCCAGGCAAAAGCTACTCCACTGGTGGGAATTACACTACAAATGGCCATATCCTTCGGAGTCAGAGAAGGTGGCGTTGGCTGAATCAACAGGATTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTTCATCCACAGAACGCAACTCTCTATATGGATGGTCACTACATGCCTGATGGTCACTACCGTCTAGGCCCATGA 1152 0.4627 MEEYNNNLSENNGVRANFLYSSGGIGYGRSSSGGGGSSVAAHQLPINTFHLQPAASDCFHQSDQPHPTVKTEANTSHHAQIFQYPLFRGNLHMMHHQGAAGGDSSNEVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVLARLAAVRQEFEARQRSSSTSREVSKDPELDQFMVRCVFCFVVNDHQEAYYDMLVKYREELTRPIQEAMDFMRRIENQLNMLCNGSVRIFSDDKCEGFGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLHWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRLGP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0800 383 Gene3D - 290 352 - -
Lele26g0800 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 355 - -
Lele26g0800 383 SMART KNOX2_2 160 224 IPR005541 GO:0003677|GO:0005634
Lele26g0800 383 Pfam ELK domain 265 286 IPR005539 GO:0003677
Lele26g0800 383 Pfam KNOX2 domain 164 223 IPR005541 GO:0003677|GO:0005634
Lele26g0800 383 SUPERFAMILY Homeodomain-like 286 360 IPR009057 -
Lele26g0800 383 SMART KNOX1_2 109 153 IPR005540 GO:0003677|GO:0005634
Lele26g0800 383 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Lele26g0800 383 SMART ELK_2 265 286 IPR005539 GO:0003677
Lele26g0800 383 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Lele26g0800 383 MobiDBLite consensus disorder prediction 237 262 - -
Lele26g0800 383 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Lele26g0800 383 SMART HOX_1 287 352 IPR001356 GO:0003677
Lele26g0800 383 CDD homeodomain 297 349 IPR001356 GO:0003677
Lele26g0800 383 Pfam KNOX1 domain 110 152 IPR005540 GO:0003677|GO:0005634
Lele26g0800 383 FunFam Homeobox protein knotted-1-like 2 290 352 - -
Lele26g0800 383 ProSitePatterns 'Homeobox' domain signature. 323 346 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0800 Lele-ChrLele26 5078326 5081390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0800 51 383 Homeobox Transcription Factor Family AT4G08150 67.347 6.09e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele26g0800 KNOX1 9.7e-24 No_clan