Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0797 ATGTTCCCTCTAAAAATGGTGATCGGAGAACTAGCTTGTTCGGTCCCCAACTTTCAGAGTTCCCAGTCCAACTTGCCTGATAATTCAACCATCTCATTGCCCGTTGATGGTTTAGCTATCAACTTACATGGCAATGCCGCTGATTGCGATTATCCACCTTCCATCGATCCCTCCACCGCGCTCCACCTTTTCCTTTCCAATGATCTCACTCCCATTGATTTGGATTCCCTCTGCGAAGATTTTGACGCTTCTTTCGACGCTTTTTCCAGCGATCATTTCCGCATCTTCGAGTTTAAGATCCGCAAATGCGCGCGTTCCCGGTCACATGACTGGACAGAGTGTCCGTGCGCCCACCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGGAAATATAAATACTCCGGCAGTGCATGCCCCGAGTATCGCAAAGGTAACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGCTGGCTTCACCCCTCTCGTTACAGGACCCAGTTCTGCAAGGACGGAACAAGTTGTGGCCGCCGAGTGTGCTTCTTCGCTCACACTCCTGAACAATTGCGGTTCCTAGATAACGGGTCGGGCGAATCATCGGAGGGGTCGCCGATTTGTCACGCTTCCTTGGTTTCATCGCCTACATCAGTACTACAGCCGTCGCCCATCTCTTCATTGGCCGAGTCCCCGCCCACATCGCCCGGAAATCCCCGACACGTCTGGAGTGAAATAAGCGCATCAATGTGTAATGTTCAAAGTGATAAGCCGACTTCAACTCGTGCTCCTCATATGCACGGTGCGTACGGTTCACCGCATGGGATCCATATGGGTTCGGGGTTTAGTTCACCCCGTGGTTCGAATCTACGACTCGGGTATTTTAGCCTCCCTTCGACTCCGAATCGGACGGTGACGAAATCTGGGCTCGGTGCTCTGGACATGTGGGATCAAGGCCACGAAGAAGAACCTGCCATGGAAAGGGTCGAGTCGGGAAGAGAACTTAGAGCCAAAATGTACGCTAAGCTCTGTAAGGAGAATTCATTCGGGCGAAGCAACACGCGGCATTCGGGAATGTTCTGA 1089 0.5253 MFPLKMVIGELACSVPNFQSSQSNLPDNSTISLPVDGLAINLHGNAADCDYPPSIDPSTALHLFLSNDLTPIDLDSLCEDFDASFDAFSSDHFRIFEFKIRKCARSRSHDWTECPCAHPGEKARRRDPRKYKYSGSACPEYRKGNCKKGDSCEFAHGVFECWLHPSRYRTQFCKDGTSCGRRVCFFAHTPEQLRFLDNGSGESSEGSPICHASLVSSPTSVLQPSPISSLAESPPTSPGNPRHVWSEISASMCNVQSDKPTSTRAPHMHGAYGSPHGIHMGSGFSSPRGSNLRLGYFSLPSTPNRTVTKSGLGALDMWDQGHEEEPAMERVESGRELRAKMYAKLCKENSFGRSNTRHSGMF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0797 362 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872
Lele26g0797 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 157 IPR000571 GO:0046872
Lele26g0797 362 Gene3D - 133 195 - -
Lele26g0797 362 MobiDBLite consensus disorder prediction 220 241 - -
Lele26g0797 362 PANTHER UNKEMPT FAMILY MEMBER 60 356 IPR045234 -
Lele26g0797 362 FunFam Zinc finger CCCH domain-containing protein 66 90 158 - -
Lele26g0797 362 SMART c3hfinal6 132 158 IPR000571 GO:0046872
Lele26g0797 362 SMART c3hfinal6 167 190 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0797 Lele-ChrLele26 5059686 5060774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0797 82 234 C2H2 Transcription Factor Family AT5G12850 55.556 5.11e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele26g0797 zf-CCCH 5.7e-06 CL0537