Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0779 ATGCTTTCTTCTTCGTCTTCGGTAAATGGCGACGAGGCTCTTCGACGAAACCGTATCCTCTCAAGCAAGCTCTACTTCGATGCCCCTCAGTCCAAGGTTCCACTTATCTACGCGAAGTCGTACAATATAGCGTTTCTGGGAATAGAGAAATTGCACCCATTTGATTCATCTAAATGGGGAAATATTTGTCGACTCCTCTTTGCATCTGGAATGCTAGACAAAAATTGCTTTGTTGAGCCTCTGGAGGCTTCCAAGGATGATCTCCTAGTGGTACATTCAGAATCATACTTGAATAGCCTGAAGAATAGTTCAAACGTTGCTATGATGATTGAGGTACCTCCAGTGGCATTATTTCCCAATTGTCTTCTGCAGCACAAAGTTCTCTTCCCATTTCGGAAGCAGGTTGGAGGGACTATATTAGCAGCAAAACTTGCAAAGGAAAGAGGATGGGCTATTAACGTAGGTGGAGGTTTCCATCATTGTTCAGCAGAAAAAGGAGGTGGATTTTGTGTGTATGCAGATATTTCTCTATGCATCCGCTTCGCTTTTGTCCAATTAAATATATCAAGGGCAATGATCATTGATCTTGATGCACACCAAGGAAATGGTCATGAAGTGGACTTTGCCAATGACAGCCGAGTCTATATCCTGGATATGTACAACCCGGGAATATATCCCTTTGATTATGAGGCCAGAAGATACATAGATCAGATAGTTGAAGTGAAGATTGCTGGGCATAGGTTTGATCCTGAGTTGGTAGTTTATAATGCTGGAACTGACATTCTGGACGGTGATCCTTTGGGCAGGTTGAAGATCAGTCCTGAAGGAATTGCTCTTCGAGATGAAAAAGTTTTCCAATTTGCTCGTGAGAAGAAGGTTCCGATTGTCATGCTCACATCAGGTGGTTACATGAAGTCCAGTGCTCGAGTCATTGCAGATTCTATAGTCAATCTCTCGAATAGATGTTTGATCGATATTAGACAAATTTTCCCCCCTCTAATAAAGGAGGTCCAATACAATAGATCTGAGTTGCTGTGCAAGTTGACCCTTCACCTCACTGTCCGCCTTGGTCCTCGTTGTTCTCACTTCTCAACTGCCCTCATCGTCTCCCAGTGGAACCCTCGGAGAACGCTGCTGGTCACCACCGCAGAATCCACTGCTAACCTGCACGGTTCTCCTTATCCTACGCTCGCCGGCGTAGCAATGTTGAGAAGTAGATCCCCATCGTCCTCTTATCACAGTCAATTGCTTGTCGTATTTATTCTTCTTCTTCCTTTCTTCTCACTTGCTTCAAGGCCCGTTGTGCCGGATCAGCTCGACCTTGTCAATACAACCGAGTCCAATGTCTCTCTGTCCCGGCCAAGAGAGGGCAGCTTTGCCGACATGATTGATCGAGCTCTGGAGCACGAGTTCACTGAGCACGATCAAAATGAAGCAGTACCTGATAAAGGCGGCTTTAACAACAGTGTTGCAGAACAGCAGGCAGTTCTGGAAACGGTGGCCAGAGTTAAGCCAAAGAAGAATGACACGAAAGAAGAAAAGTCATTTCAATTCCATCATGTATTCAATCTGGACAATGATAATAGAGCCGAGGATACCCCCATGTTAATAGATCGAAAGGACAACGTATTTATAATTTCTAACTTTAAATCCAAGTATCCAGTGCTGCAGCTAGATTTAAGATTAATTTCAGACCTTGTAGTTGCAATTGTTTCGGCAACTTGTGGTGGTGTTGCATTTGCCTTTGCTGGACAGCCGGTTATTACTGGATATCTGCTAGCAGGCTCTATAGTTGGACCTGGAGGGTTTAACTTCATCAGTGAAATGGTGCAGGTGGAAACTGTGGCTCAATTTGGTGTGATATTTCTTCTGTTTGCATTGGGCCTGGAGTTTTCCATGACCAAGCTTCGAGTTGTTCGAGCAGTTGCCGTTCTAGGAGGCCTACTTCAAATTTTTTTATTTATTTGCTTATGTGGAGTTGCAGCCTTGTTATGTGGTGGTAAAGCTTCAGAGGGAGTCTTTGTTGGTTCTTTTCTTTCTATGTCTTCAACTGCGGTGGTCTTGAAGTTTTTGATGGAAAAGAACACCACCAATGTCCTTCATGGACAAGTAACAATTGGGACACTTATTTTGCAGGATTGCGCTGTTGGACTGCTGTTTGCATTGCTTCCAGTTCTTGGTGGCACCTCAGGTGTTCTTCATGGGGTGATATCCATGACGAAACTGTTGGTGATGTTGATTGCATTCCTCTCAGTTCTGTCAATTTTATCTCGTACTTTCCTTCCATGGTTACTTAAACTAATGATGAGCCTATCATCACAGACGAATGAACTCTATCAGTTGGCATCAGTTGCATTCTGCTTACTTGTAGCATGGTGTAGTGATAAGCTGGGACTAAGTCTAGAATTGGGTTCTTTTGCTGCTGGAGTGATGATTGCAACCACTGATCTAGCTCAACATACACTAGAGCAAATTGAACCTATTCGCAATCTTTTTGCTGCTCTTTTCCTTGCCAGCATTGGAATGCTGATCCATGTTCATTTCCTCTGGAACCATGTTGATATATTGCTAGCATCTGTAATTTTGGTCATCGTTGTAAAAACTGTCATAATTGCTGCTGTCGTGAAAGGGTTTGGTTATAACAACAAGACTGCAGTTCTGGTTGGAATGTCAATGGCTCAAATTGGAGAATTTGCTTTTGTTCTTCTCAGCCGTGCTTCAAATCTTCATCTAGTGGAGGGCAAACTGTATCTGCTGCTTCTTGGTACCACAGCTCTAAGTCTGGTTACTACTCCTTTACTTTTCAAGCTAATCCCTGCTGTAGTGCATCTTGGTGTGCTATTGAGGTGGTTCTCTCCTGACAGTTTAGTGGAGTTTGGACTTAAGGTTGATACTCTCCGGTCAGAGAGTGGCAAGCAGCGGATCATTTTGATGGACCAAGAATCGCATGATTCTTAG 2958 0.4361 MLSSSSSVNGDEALRRNRILSSKLYFDAPQSKVPLIYAKSYNIAFLGIEKLHPFDSSKWGNICRLLFASGMLDKNCFVEPLEASKDDLLVVHSESYLNSLKNSSNVAMMIEVPPVALFPNCLLQHKVLFPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAEKGGGFCVYADISLCIRFAFVQLNISRAMIIDLDAHQGNGHEVDFANDSRVYILDMYNPGIYPFDYEARRYIDQIVEVKIAGHRFDPELVVYNAGTDILDGDPLGRLKISPEGIALRDEKVFQFAREKKVPIVMLTSGGYMKSSARVIADSIVNLSNRCLIDIRQIFPPLIKEVQYNRSELLCKLTLHLTVRLGPRCSHFSTALIVSQWNPRRTLLVTTAESTANLHGSPYPTLAGVAMLRSRSPSSSYHSQLLVVFILLLPFFSLASRPVVPDQLDLVNTTESNVSLSRPREGSFADMIDRALEHEFTEHDQNEAVPDKGGFNNSVAEQQAVLETVARVKPKKNDTKEEKSFQFHHVFNLDNDNRAEDTPMLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVAIVSATCGGVAFAFAGQPVITGYLLAGSIVGPGGFNFISEMVQVETVAQFGVIFLLFALGLEFSMTKLRVVRAVAVLGGLLQIFLFICLCGVAALLCGGKASEGVFVGSFLSMSSTAVVLKFLMEKNTTNVLHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLHGVISMTKLLVMLIAFLSVLSILSRTFLPWLLKLMMSLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMIATTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVHFLWNHVDILLASVILVIVVKTVIIAAVVKGFGYNNKTAVLVGMSMAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSLVEFGLKVDTLRSESGKQRIILMDQESHDS 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0779 985 FunFam Histone deacetylase 11 33 325 - -
Lele26g0779 985 Pfam Histone deacetylase domain 52 229 IPR023801 -
Lele26g0779 985 Pfam Histone deacetylase domain 244 316 IPR023801 -
Lele26g0779 985 Pfam Sodium/hydrogen exchanger family 567 936 IPR006153 GO:0006812|GO:0015299|GO:0016020|GO:0055085
Lele26g0779 985 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 437 975 IPR045158 GO:0015386|GO:0071805|GO:1902600
Lele26g0779 985 Gene3D Histone deacetylase domain 33 343 IPR037138 -
Lele26g0779 985 SUPERFAMILY Arginase/deacetylase 30 320 IPR023696 -
Lele26g0779 985 Gene3D - 560 943 IPR038770 -
Lele26g0779 985 CDD HDAC_classIV 52 318 IPR044150 GO:0004407|GO:0016575
Lele26g0779 985 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Lele26g0779 985 PRINTS Histone deacetylase superfamily signature 250 260 IPR000286 -
Lele26g0779 985 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0779 Lele-ChrLele26 4959070 4971857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0779 453 985 Antiporters AT5G11800 82.584 0.0 867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0779 26 4959070 4971857 Lele28g0766 28 4878758 4883065 hybridization