Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0680 ATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATCTAGATGAGTCAGATGATGATGCTGACTTTTTGCCTGGGAAACCAGGGAGAACTGAGGAAAACTTTGAGAGGATAGTTCGAAGTGATGCTAAAGAGAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTAAGCTGTGAAACTTGTACTTATGCTTTCCATCCTAAGTGCTTACTTCGACCACTTAAAGCTCCACTTCCAGATAATTGGAGGTGCCCTGAATGTGTTAGCCCGTTAAGTGATATTGAAAAGATACTAGATTGTGAGATGCGCCCAATTGTAGCGGGTGATGGCGAGGCCTCAAAACTGGGCTCAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTTTCGTATCTGCACTGCGTGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTTACATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCACAAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAATGGACCATGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTTCATACGATGAATGCTATTGGGAGTCTGAGTCTGATATTTCTGCATTTCAACCAGAAATAGAAAGATTTACAAAACTTCAGTCTAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGTGGCGGTAAGGATGGTGCTGAAGAAAAAAAGAAGCAGAAAGAATTTCAACACTATGAACAAAGCCCCATCTTTCTTTCGGGTGGCACCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTGCGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTGTCAACTCTCCGAAATTGGGAACGTGAATTTGCAACATGGGCGCCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAACTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTTTTGACATCATATGAAATGATCAACTTCGACTCAGCATCGTTGAAACCTATAATGTGGGAGTGCATTATAGTTGATGAAGGTCACCGACTGAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACTGGGACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAAGAGTTTAGAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCTCCGCATCTCCTTCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCTCCTAAAAAGGAACTTATTTTAAGAGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACACGTAATTATCAAATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATAAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTGAAGATCCAAAAGAATCAAACAAACAGCTACTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACCTGTTAGAAGATTACTGTTCTTACAAGAATTGGCTGTATGAAAGGATAGATGGCAAGGTTGCTGGATCTGAAAGACAAATAAGGATAGATCGGTTTAATGCAAAAAATTCCTCGAGATTTTGCTTTCTTCTTTCGACCAGAGCTGGAGGATTGGGAATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAGAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGTTGTTGGAAGGCTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGACGAGAATGATGAAGCTGGCAAATCCCGCCAAATTCATTATGACGATGCTTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAAGCTATGGTGGATGATGAAGACGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCAGAGGAGGCAAGGAAAAAAGAAAAGGAAAATAAAAATACTGTTAACAATTCAGATAGAGCTAATTACTGGGAGGATTTGTTGAGAGACCGATATGAAGAGCATAAAACTGAAGAGTTTAGTTCCTTGGGCAAGGGCAAGCGAAACCGCAAGCTGCTCTTTGGTATAGATTATGCTAATAATTGGCACTTCAACAAGGAGAGTTCCACATTTACTATTTGTACTTTGAAATTGCCATCATCATTAAAGGCAATGTCTGTATTTGCCAAGTATCAGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAAGCAGATCTTACTGATGGTGATTCAAATTCAACTGGAACTACTTCGGGTAGAAGGCCTTACAGAAAGAAAGCCCGTGCAGATAGTACAGAGCCACTTCCCTTGATGGAAGGTGAAGGAAGATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTATGCTCAAGTTGGTTAATGATTGTATCTGAACTTGTCCTTTGGCTTTTATGTATTGAAGAAAAGGTTCTGCTTGTCAATATCTGCAATTCATCTCAATTAAGAGTCTATTACAGTTATGGATTCCTTTTCTTGTCTCATATCGCTGAAGATATAACTGATTCTCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTAAGAATACATGATGTACTAGTTAGGATTGCAGTTCTTCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAAGGATCCTGGAACTCTGCTTTACACAGCTGACATCTTATTGCGGTATCCTGTTTTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATATAGTGTTACTGCGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTAGATGACAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATAATAAATTTACCGGTACCGGGACAAGTCAGTACTCAGTCGCAAAATGGTGCAAATTCAACAAATGTAGAAGCACTGGCCAACCAACCTGGGGAAAATGGTGGGAGTGATATGGTAGCTGATGGTGCGCCGGGTTCTGGTGATTCTAGGAACCAAGCACAGCTATATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTCGAGTTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAAGGGCTCTATGCTGAGTACCAGAAAGAATACTTTGATGACCATAATACTAATGAAGCCGTGAATGGAGAATTTAAGAATGAACCAAAGGATTCAAATGTTCCAAGATATAAATCAGGGGAGATTGACAAGAAAACGATTGATCAACTGCCTCAATTAGAAGAAATAGCTTATGAAGAATTTTCTGCTGCTGCTTGTGATAGTGACCCAAATCGATCGGAGTTGGTTCGACTTTACAATGAGATGTGCAAGGTTGCGGATGAAAACACCTCTGAATTGGCTGGAGGACCAGCAGATGTCAGCTTGATGAAGAACTTGCTTCCCCTTGAAACTGTTTGTGAAGACATCAATAAAATTCTAACACCCACCAAGCAAGATGATGGCACTGCGGAGATGCCAATACCGAGTCCAGGTATCAAATCAGAGGCTTTATCTGAGAGTGAAGTTGCTGTCGCCAGATTGCCCTCAACTCCTCAAGATGACTGCAAACGTGACAATGCAGTGAACGATGAGGGAAAAGATGCGGTGATTGGGTCCGACAACGGAAAAGAAAGCGGATCAGAGACAAGGGGAGGTGATGTTGAAATGGGCGAAGCCAGCAATGATGCTGAGTTGGATGAAAACATGGATAAATCTGATCCAGGGGTCGTTGCGTTGGATGGGTAA 4458 0.4047 MSSLVERLRVRSDRKPVYNLDESDDDADFLPGKPGRTEENFERIVRSDAKENSCQACGESEDLLSCETCTYAFHPKCLLRPLKAPLPDNWRCPECVSPLSDIEKILDCEMRPIVAGDGEASKLGSKQIFVKQYLVKWKGLSYLHCVWVSEKEFLKAFKLHPRLKTKVNNFHRQMASTNTSDEDFVAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYDECYWESESDISAFQPEIERFTKLQSRSRRSASSKQKSGGKDGAEEKKKQKEFQHYEQSPIFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARTVIREYEFYFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINFDSASLKPIMWECIIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKESNKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWLYERIDGKVAGSERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAMVDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKEKENKNTVNNSDRANYWEDLLRDRYEEHKTEEFSSLGKGKRNRKLLFGIDYANNWHFNKESSTFTICTLKLPSSLKAMSVFAKYQMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSGRRPYRKKARADSTEPLPLMEGEGRSFRVLGFNQSQRAQFVQILMRLCSSWLMIVSELVLWLLCIEEKVLLVNICNSSQLRVYYSYGFLFLSHIAEDITDSPTFSDGVPKEGLRIHDVLVRIAVLLLIRDKVKFASEKDPGTLLYTADILLRYPVLKGGKIWKEEHDIVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVPGQVSTQSQNGANSTNVEALANQPGENGGSDMVADGAPGSGDSRNQAQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFDDHNTNEAVNGEFKNEPKDSNVPRYKSGEIDKKTIDQLPQLEEIAYEEFSAAACDSDPNRSELVRLYNEMCKVADENTSELAGGPADVSLMKNLLPLETVCEDINKILTPTKQDDGTAEMPIPSPGIKSEALSESEVAVARLPSTPQDDCKRDNAVNDEGKDAVIGSDNGKESGSETRGGDVEMGEASNDAELDENMDKSDPGVVALDG 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0680 1485 Gene3D - 529 753 IPR027417 -
Lele26g0680 1485 CDD CD2_tandem 190 239 - -
Lele26g0680 1485 Pfam CHD subfamily II, DUF1087 843 896 IPR009463 -
Lele26g0680 1485 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Lele26g0680 1485 SUPERFAMILY Chromo domain-like 180 244 IPR016197 -
Lele26g0680 1485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Lele26g0680 1485 CDD SF2_C_SNF 607 733 - -
Lele26g0680 1485 Coils Coil 834 861 - -
Lele26g0680 1485 MobiDBLite consensus disorder prediction 253 268 - -
Lele26g0680 1485 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Lele26g0680 1485 SMART DUF1086_2 952 1126 IPR009462 GO:0003677|GO:0006338
Lele26g0680 1485 MobiDBLite consensus disorder prediction 242 268 - -
Lele26g0680 1485 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Lele26g0680 1485 Gene3D - 180 241 - -
Lele26g0680 1485 Gene3D - 1092 1234 - -
Lele26g0680 1485 CDD CD1_tandem 102 172 - -
Lele26g0680 1485 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Lele26g0680 1485 Gene3D - 100 175 - -
Lele26g0680 1485 MobiDBLite consensus disorder prediction 949 995 - -
Lele26g0680 1485 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 156 IPR023780 -
Lele26g0680 1485 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Lele26g0680 1485 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 23 1354 - -
Lele26g0680 1485 SMART PHD_3 53 96 IPR001965 -
Lele26g0680 1485 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Lele26g0680 1485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Lele26g0680 1485 MobiDBLite consensus disorder prediction 949 964 - -
Lele26g0680 1485 SUPERFAMILY Chromo domain-like 66 178 IPR016197 -
Lele26g0680 1485 SMART ultradead3 282 495 IPR014001 -
Lele26g0680 1485 SMART DUF1087_2 842 910 IPR009463 -
Lele26g0680 1485 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Lele26g0680 1485 Pfam PHD-finger 54 96 IPR019787 -
Lele26g0680 1485 MobiDBLite consensus disorder prediction 1205 1231 - -
Lele26g0680 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Lele26g0680 1485 MobiDBLite consensus disorder prediction 1413 1485 - -
Lele26g0680 1485 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Lele26g0680 1485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Lele26g0680 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 519 IPR027417 -
Lele26g0680 1485 SMART helicmild6 638 722 IPR001650 -
Lele26g0680 1485 Gene3D - 278 528 IPR038718 -
Lele26g0680 1485 Pfam CHD subfamily II, SANT-like domain 975 1115 IPR009462 GO:0003677|GO:0006338
Lele26g0680 1485 SMART chromo_7 190 244 IPR000953 -
Lele26g0680 1485 SMART chromo_7 99 168 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0680 Lele-ChrLele26 4323170 4336487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0680 308 783 RAD5 or RAD16-like Gene Family AT1G02670 22.842 7.10e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele26g0680 SNF2_N 9.6e-67 CL0023