Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0679 ATGACTGTGGAAACCAGAACTGATGAACCCAGAGGACAATTTCCTGTAGGAATGCGTGTTCTTGCTGTTGACGATGACCCAACTTGTCTCTTGGTGTTGGAAACTCTACTTCGGAGATGCCAATATAACGTGACGACGACCAATCAGGCAATAACAGCTTTGAAGATGCTAAGAGAAAACAAAAACATGTTCGACCTGGTTATTAGTGATGTTCATATGCCTGACATGGATGGATTTAAGCTTCTTGAGCTTGTCGGTCTTGAGATGGACCTACCTGTCATAATGTTGTCTGCAAATGGCGACACAAAGCTGGTGATGAAGGGGATTACGCATGGGGCTTGTGACTATCTTCTGAAACCTGTTCGAATTGAAGAGCTAAAGAACATTTGGCAGCATGTGATAAGGAGGAAGAAATTTGACTCAAAGGATAAAAACAGTACTTGTAATCAAGACAAGCCTCATTCTGGTACTGCCAACAATGGATTAGGCTCTGCAGGAGCTGGGAATACTGATCAAAATGGAAAGTTCACCAAGAAAAGGAAGGATCAGGATGATGAAGATGATGATGAACACGAGCATGGCCATGACAATGATGATCCTTCAGCACAGAAGAAGCCTCGTGTTGTTTGGTCTGTTGAGCTCCACAGAAAGTTTGTTGCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCTAAGAAAATTCTGGATTTGATGAATGTTGAGAAACTCACGAGGGAAAACGTGGCAAGCCATCTTCAGAAATATAGGCTGTATCTGAAGAGAATCAGCTGTGTAGCGAACCAACAGGCTAATATGGTGGCAGCCTTAGGTAGTGCAGATGCATCCTATTTGAGAGTGGGATCTCTGGGTGGGATTAAACATCTTCAGCCATTGAGTGCTTCTGGACATTTTCAGAACGATGTTTATCGATCCCTCCCGAATAGTGGGATGATCGGAAGACTGAACACTCCTGCTGGTCTTGGTATTCATGGGTTGCCTTCATCAGGAATTCTTCAGTTGGCTCATGCACAGAATTTAAACAACAACAACAGCAACAGCAACTCCATGAATGATCCTCTCAAGTTCCAGTCATCCATAGCTCATGTCAATCAGAATCAGAATGGTGGTTCGCTTCAGGGCATGCCAGGGTCTGTAGGGCTTGACCAATTACAACAGCCTAATAAGGTTGTCAGTTCTGTTCAAGGTCCTACCACTGGTTTTGATGATAAAACAATGTCTCTCATCTCAAACAAGTTGCCTGATCCAAGAGCAAGAGTAAGCTCTAGTTGCTCTAGACCTCCACTCGTGGGCATCGAGACCAATGGCTTGTTGTTAGAACCGAATTCTCAAGACACGCAAGGTGGGAGAGGGTATGAGAATCTTGCTTCAGTAGCCTCTCAACATTCAGAATTTGCTTTGCCTTTGATGGATAATCATAATGGAAGGTGTAATGATAATTGGCCAAGTGCTGTGCAGTCATCTGGGATGCCCACTAATTCTTACCCAACAAATGATTGTCTTCATGGAGGAATTCCAAGTGGCGCTTCGTCCATCACTTTGCTATCCACTCGTTCCCGCGAATCATTGGCAGATATGCCATCCCATGGACCCATTTTTACCAATAACACACCAAACGTGGCTTATCAAGGGTGGGATGAACATCCATTAGACTCTCTGGTTCCTGTAAATGGTGCCGTTGGTGCATCAGGATTACACAGAAACTTGAACTATAGTTTCGGCAATCCCTTAGAAATGAAGCATGAGGGGTTCACAAAGTCAGCCGAAGATCCCTCACTGAAACCAAATCAGGGATATATCATGGACCCCAATAAGGCACAGAGGAGTCGCATCTCTAATAATAATCTTGGTTCATTGGAGGACTTGGTCAGTGCAATGATGAAACAGGAGCAAGACTTCATATGTGACGATTTCACTGGTGGAATATCTATGTGA 1956 0.4402 MTVETRTDEPRGQFPVGMRVLAVDDDPTCLLVLETLLRRCQYNVTTTNQAITALKMLRENKNMFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKDKNSTCNQDKPHSGTANNGLGSAGAGNTDQNGKFTKKRKDQDDEDDDEHEHGHDNDDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADASYLRVGSLGGIKHLQPLSASGHFQNDVYRSLPNSGMIGRLNTPAGLGIHGLPSSGILQLAHAQNLNNNNSNSNSMNDPLKFQSSIAHVNQNQNGGSLQGMPGSVGLDQLQQPNKVVSSVQGPTTGFDDKTMSLISNKLPDPRARVSSSCSRPPLVGIETNGLLLEPNSQDTQGGRGYENLASVASQHSEFALPLMDNHNGRCNDNWPSAVQSSGMPTNSYPTNDCLHGGIPSGASSITLLSTRSRESLADMPSHGPIFTNNTPNVAYQGWDEHPLDSLVPVNGAVGASGLHRNLNYSFGNPLEMKHEGFTKSAEDPSLKPNQGYIMDPNKAQRSRISNNNLGSLEDLVSAMMKQEQDFICDDFTGGISM 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0679 651 SUPERFAMILY CheY-like 17 139 IPR011006 -
Lele26g0679 651 MobiDBLite consensus disorder prediction 174 203 - -
Lele26g0679 651 FunFam Two-component response regulator 201 264 - -
Lele26g0679 651 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lele26g0679 651 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 362 IPR045279 GO:0009736
Lele26g0679 651 Gene3D - 18 168 - -
Lele26g0679 651 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Lele26g0679 651 MobiDBLite consensus disorder prediction 140 204 - -
Lele26g0679 651 PIRSF RR_ARR_type-B 1 649 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele26g0679 651 Gene3D - 201 264 - -
Lele26g0679 651 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Lele26g0679 651 MobiDBLite consensus disorder prediction 150 173 - -
Lele26g0679 651 CDD REC_typeB_ARR-like 20 134 - -
Lele26g0679 651 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Lele26g0679 651 SUPERFAMILY Homeodomain-like 203 262 IPR009057 -
Lele26g0679 651 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lele26g0679 651 FunFam Two-component response regulator 18 205 - -
Lele26g0679 651 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0679 Lele-ChrLele26 4318307 4321315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0679 1 498 Response Regulator Gene Family AT2G25180 51.186 1.47e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele26g0679 Response_reg 4e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0679 26 4318307 4321315 Lele02g0657 02 3932593 3936180 CCT
Lele26g0679 26 4318307 4321315 Lele27g1419 27 20457429 20460449 hybridization
Lele26g0679 26 4318307 4321315 Lele28g0663 28 4228623 4231628 hybridization