Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0631 ATGTTCGTCTTAGAAGTAAAGATTAAAATTCACGGGAAGGATTTAAGTTTAAATCCCAGGCACGTGAGAATTTCGCTAATGAATATTTTTTCGGGAGTGAGTCATCTGTATCTGTCTATAAAAGGCGTCGAACCAATTAACCCTATTCCGAGAACGCTCACTTTCCTCCGCTCCATCTCTGGCGGTCGTCGAGCGGAATCTTCTACTCTCGCAGCACCAATGGGAGAAACTAAGGACGAAGGATATGAGGAAGAGCTTCTCGACTACGAAGAGGAAGAGGACAAGGCGCCCGATTCCGTTGGGACTAAAGCCAACGGTGAAGCGGCCAAAAAGGGATATGTCGGTATACATAGTTCAGGATTCAGAGACTTCCTTTTGAAGCCAGAACTCCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCATCTGAAGTTCAACACGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCTGGAATGGGGAAAACTGCTGTCTTTGTGCTTTCAACTTTGCAACAAATTGATCCTGTTGCTGGCCAAGTTTCTGCCCTTGTTTTGTGTCACACAAGGGAATTGGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACCTACCTGCCTGATCTCAAGGTTGCTGTTTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATACTAGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGGCATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGGGACGTGCAAGAAATTTTCAAGATGACTCCTCATGATAAGCAAGTCATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAGGATCCTATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTAGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGCAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTAGTCATCTTCGTAAAAAGTGTGAGTAGAGCTGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAGGAAAGGTTAAAGCGATATAAAGGTTTCAAAGAGGGGCATACTCGGATTCTTGTAGCAACAGATCTGGTTGGAAGAGGCATTGACATTGAACGTGTCAACATAGTCATAAACTATGACATGCCGGATTCTGCGGATACATACTTGCACAGGGTTGGCAGAGCAGGAAGATTTGGCACCAAGGGCCTCGCAATTACTTTTGTTTCGTGTGCTGCAGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGATATAAAACAGCTTCCGGAGCAGATTGATACATCTACATATATGCCATCATAG 1503 0.4318 MFVLEVKIKIHGKDLSLNPRHVRISLMNIFSGVSHLYLSIKGVEPINPIPRTLTFLRSISGGRRAESSTLAAPMGETKDEGYEEELLDYEEEEDKAPDSVGTKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0631 500 FunFam DEAD-box ATP-dependent RNA helicase 56-like 107 325 - -
Lele26g0631 500 Pfam DEAD/DEAH box helicase 144 309 IPR011545 GO:0003676|GO:0005524
Lele26g0631 500 SMART ultradead3 138 339 IPR014001 -
Lele26g0631 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 323 IPR014001 -
Lele26g0631 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 467 IPR027417 -
Lele26g0631 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 496 IPR001650 -
Lele26g0631 500 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 117 474 - -
Lele26g0631 500 CDD SF2_C_DEAD 336 465 - -
Lele26g0631 500 CDD DEADc_DDX39 118 325 - -
Lele26g0631 500 Gene3D - 115 331 IPR027417 -
Lele26g0631 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Lele26g0631 500 Pfam Helicase conserved C-terminal domain 349 456 IPR001650 -
Lele26g0631 500 FunFam DEAD-box ATP-dependent RNA helicase 332 500 - -
Lele26g0631 500 SMART helicmild6 375 456 IPR001650 -
Lele26g0631 500 Gene3D - 332 499 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0631 Lele-ChrLele26 4027144 4032694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0631 74 500 Eukaryotic Initiation Factors Gene Family AT5G11200 83.156 0.0 758