Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0623 ATGGATTCTCCTGATATTACGAAGAAAACCCCCACTTCCGTAGCCACTGCCGATGCTGCTGCTTCTTCTGAATCTCCTCCTGAGTCCCCTTTTTTCAGCTTTGTAAACAATTTATCTCCAATAAAGTCTGTCAAGGCTTCTCGTGTGGTTCAAGATTTCCTAGGACTAAATTCTCCCCCTGTCGTCTTCACGTCACCACGTATTAATCCCCATCTTGGATCCAAATTCTTAGAGAGGCCTCAATGCTCTCAATCAGCCACTGTGGAAATTTCTCAAAGTGTCAATGGAGGCAAGAGACTTGCTGATAATCCTGTTGATTCGGAAAAATCTACTTCTTTATCGCCGGGATTTATAACTGATAGCAAGAATCATTCAAACACTCAGCGCTGCAGCTCTTCACTGTGTGTAGAATCTATAGATGAATATTTAGCTGATCCTTCAGATATTGATCATACGTCTTCGGGGCATTCATTCGACCCCGACGTGAAGCAATCCAATGAGAATGTTGGATCATCACTAAATGACTCAACTTACACAAAGAGAGCCATATCAGAAGTTGATGACAAAAATGGTCCTGGTGACAAGATGAACGAATCTTTGCTTTTGTTAGAGGAGTCTGAAGCCAGCTATCAAGAAAAGACAAGACTAGTTGATGAAGCAGGGAAAGTAGAAGGGGAGAAAGCTGTTGAATGGCCTTCTCAAGAATGTGCAAAGTTAGGGTCTATTTTGTCTGCTGACCATGTTTTTGAGAAGCAACGTTCTGATGATTCAATTGTTCAGTGCACAGGAAATGAAATGCAGGATCGTTCTGATTGTACCTCTCAGTCGATGTTTGAGCCTTTGCTGGATGTAAAAGAATGTGAAGATGGTAGCGAGATGGGGACAACCTCTTCTGTAAGTGTACGGAACATGTCACAGGACAGCACCAAGGCCAGCCAAAAGAACCGAGGCCTGCGTAGACGTTGCCTTAAGTTTGAGGAGGCCGCGTCAAGTGCTTTTAGAAATTTGAACAGCTCCCCGCTTCAAGCCCATGTTCCCGAAGATTTAATACCATCATCTAACTCCTCAGATCCAAAAGATTTAGAAGCTTCACATGTTGCACCGAATGACACTTCAGCTGAAAAGAGAATGGTCAATCAGTCCAAACCTATCACTACCACATTTTCTCCACGGTGTAGTGGAAGCTTCCCTGTGAAAGGTTCCAAGCCATCCGGTATCGGGTTGCACTTAAATAGCATTGTAAATGCTATGCCTCATGGCCGTGCTGCATTTACAGGTATGAGACTAGCAGAGGGTTGTACAGGTTTACAAGGCGGGAAGTCAGTTCCTTTACTAAGCTGCCGCAATGCTGAGGACCTAAACAGAGGCTTAATTTCATCAAACATGGACGAGCAACCATCAGTTGGAAATAAATGTGAGGGGTACGAAAGGAAAGCTTCGATAACTGCGGATTCTCTCCCCTCTGGGTCTCCGAGCTCTATAGAACCTGCAAATTTGTCAATACACGTTGAGAATCCAGCAAGTGTCCAAGATGAGAGAAAATTAAGATTTGTTGGTGATGGAAAATTTGAGGATTCCAATCAAACAAGCCCCAAAAAGCAAAATTACTGTGATTGCTTTGCAGCCGGATTATTTTGTGCTGAGTCTTGTGCTTGCCAAGACTGCTATAATAGACCAGAACATGGAGATTTGGTTCTCGAGACCAGGCAGCAAATAGAAACCCGTAACCCACTTGCATTTGCACCGAAGATTGTGCAGCATGTTACTGATTTTCCTTCAAATAATATGGACGATACCAATATAACGACACCATCATCGGCAAGACATAAAAGAGGTTGCAACTGCAAAAAGTCAATGTGTCTGAAAAAATATTATTACGTTCCCATTGAACATGCTTTGATTGAAGAAAGGAGAGACAGAGCAGAAGAAGGATCAAATAGCACGGAGGCAAAGAAGACGGATTGGTTGCATGGAGAGTTGTATGACCTGCACCGCCTTTCTCCTCTAACACCGTCTTTGCAATACTCAGACCAAGGAAAGCAAGCTGCAAATTTACGAGCTCCTTCTGGGAAATATCTTCAAGCCACAGAGATGATAAGAAATGCTTCTTACGATTGCCAACCAGATAGCAACAACATGGAAATAATGGATCAACCGTCACCAAGATGTAATTCAGTTGCCAAAGTAGGCCAGCTCACTATTTCTAATTCTCAGTCAATGTCTAGTGCTTCATTCTCAACTAAAACAAGGGATCAGACGCATATTCCCCGTGTTCTATCCGGCGGTTCCCTTCGGCGGCGTAGTTCACCAATCACCCCGATGACTAAATTAGGTGAAACTAAATCTCTACAGTGTCTTGAATCGGAGAGCAAACTTTATGACATTCTAGAAGATGAAACTCCTGAGATGTTGAAGGAAGCTTCAACTCCCATTAAGTCTGTGAAAACAAGTTCCCCTAAGCAGAAGCGAGTTTCCCCTCCACACTGTCATTTACGTGAACTCGGTTCAAGCTCTTCAGGGGGCTTGAGAAGTGGCAGGAAGTTTATATTGAAAGCTGTACCTTCTTTCCCACCACTGACCCCATGTATTGTTTCGAAAGCCAGTGATCATGGGAATTCAGAGAACAGTAAGCAAGTGACGGACGAAACAGAAAGGGCTATCATCCGATCCGAAACAGAAAGGGGTATTTAA 2691 0.4348 MDSPDITKKTPTSVATADAAASSESPPESPFFSFVNNLSPIKSVKASRVVQDFLGLNSPPVVFTSPRINPHLGSKFLERPQCSQSATVEISQSVNGGKRLADNPVDSEKSTSLSPGFITDSKNHSNTQRCSSSLCVESIDEYLADPSDIDHTSSGHSFDPDVKQSNENVGSSLNDSTYTKRAISEVDDKNGPGDKMNESLLLLEESEASYQEKTRLVDEAGKVEGEKAVEWPSQECAKLGSILSADHVFEKQRSDDSIVQCTGNEMQDRSDCTSQSMFEPLLDVKECEDGSEMGTTSSVSVRNMSQDSTKASQKNRGLRRRCLKFEEAASSAFRNLNSSPLQAHVPEDLIPSSNSSDPKDLEASHVAPNDTSAEKRMVNQSKPITTTFSPRCSGSFPVKGSKPSGIGLHLNSIVNAMPHGRAAFTGMRLAEGCTGLQGGKSVPLLSCRNAEDLNRGLISSNMDEQPSVGNKCEGYERKASITADSLPSGSPSSIEPANLSIHVENPASVQDERKLRFVGDGKFEDSNQTSPKKQNYCDCFAAGLFCAESCACQDCYNRPEHGDLVLETRQQIETRNPLAFAPKIVQHVTDFPSNNMDDTNITTPSSARHKRGCNCKKSMCLKKYYYVPIEHALIEERRDRAEEGSNSTEAKKTDWLHGELYDLHRLSPLTPSLQYSDQGKQAANLRAPSGKYLQATEMIRNASYDCQPDSNNMEIMDQPSPRCNSVAKVGQLTISNSQSMSSASFSTKTRDQTHIPRVLSGGSLRRRSSPITPMTKLGETKSLQCLESESKLYDILEDETPEMLKEASTPIKSVKTSSPKQKRVSPPHCHLRELGSSSSGGLRSGRKFILKAVPSFPPLTPCIVSKASDHGNSENSKQVTDETERAIIRSETERGI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0623 896 MobiDBLite consensus disorder prediction 288 318 - -
Lele26g0623 896 SMART CXC_2 527 561 IPR033467 -
Lele26g0623 896 MobiDBLite consensus disorder prediction 803 843 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 291 312 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 861 896 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 1 29 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 88 130 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 158 174 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 875 896 - -
Lele26g0623 896 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 534 558 IPR005172 -
Lele26g0623 896 MobiDBLite consensus disorder prediction 146 174 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 739 756 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 338 360 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 739 775 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 106 130 - -
Lele26g0623 896 MobiDBLite consensus disorder prediction 338 365 - -
Lele26g0623 896 ProSiteProfiles CRC domain profile. 525 650 IPR005172 -
Lele26g0623 896 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 624 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0623 Lele-ChrLele26 3981098 3986057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0623 798 861 CPP Transcription Factor Family AT4G14770 47.059 2.15e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele26g0623 TCR 6.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0623 26 3981098 3986057 Lele27g1476 27 20817053 20824763 hybridization
Lele26g0623 26 3981098 3986057 Lele28g0607 28 3897165 3902112 hybridization