Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0617 ATGCCGGCGGTACGTCAAAAAATGAAGAATCTTTTTGCCCATTCGATCTTTTGCAGCAGAGGAGACGAGCAAGAGATTGAGCTTGAGCACATGTCCAGGGACGAGGGCAGCCATTACAGCCTCGTCGGAGCCCCTCTTCCTTCTCTTGGCGCCAGTGCCGCTAGCACCAATCGCCGACCCAAGCTCCGATCCTTCATCATCTCTCCTTTCAACCCTCGTTACAGATGCTGGGAAACATTTCTGGTCCTTTTAGTTTTCTACACTGCATGGGTTTGCCCCTTTGAATTTGGATTCCTAAATGAATCTAAGGGTCCTCTTGCTATAGCAGATAATGTTGTCAACGGCTTTTTTGCCATTGACATTGTTCTGACGTTCTTTGTTGCCTACCTCGACAAGAGTTCTTATCTGTTTATAGACAAACCGAAGCTGATTGCATCGAGATATGCCAAAACCTGGCTGTTCTTTGATGTCATCTCTACCATCCCTTTTGAACTTACTCGTAAAGTACTGCCCAACTCTCTTCAGACATATGGGCTCTTTAACATGCTGCGCCTTTGGCGTCTCCGTAGAGTCAGTGCTTTGTTTGCAAGATTAGAAAAGGACAGGAATTTTAACTACATCTGGGTCCGCTGTTCAAAGCTGATATGTGTTGTAATGTTTACAGTGCATTTTGCCGCCTGCTTTATGTATTTTCTGGCTGCAAATCATGACATAAAAACCACATGGTTTAGCCTAGTTGCTAACGGCGACCAGTTTCATCTGTGGGGACACTATGTAACATCAGTATACTGGGCCTTGGTTACTATGTCGACCGTTGGTTATGGTGATTTGCATCCCGTGAATACAAAGGAGATGACGTTTGACATTTTCTACATATTCTACATCCTTGGACTTAACTCATATCTTATAGGAAATATGACCAATATGGTTGTCCATCTCACAAGTCGAACGAGGAAATATAGAGACACTGTTCAAGCTGCCTCAGGTTTTGCACAGCGGAACCAGTTGCCTGTCCGCTTGCAAGAGCAGATGCTTGCTCATTTGTTTATGAGGTACAGAACAGATTTAGAAGGACTTCAGCATCAAGAGGTTATTGATTCTCTTCCAAAAGCGATTCGATCCAGCATATCACACCACCTCTTCCATTCACTTGTTGACAAAGTCTACTTATTTCATGGCGTCTCCAATGACCTACTTTTTCAACTGGTCGCGGAGATGAATGCTGAGTACTTTCCTCCAAAGGAAGATGTGATTTTACAGAATGAAGCACCAACAGACTTTTATATATTGGTTACGGGCGCAGCTGTTGTTGGTGAGGCAAAGGTAGGAGATGTAGTTGGAGAGATAGGCGTGCTATGTTACAGGCCACAGCTCTTTACAGTTCGAACCAAACGATTGAGCCAGCTTTTACGTCTGAATCGCACTGCATTTATAAATCTTGCTCATTCAAATGTTGGAGATGGGACAATAATCATGAGTAATTTCCTTCAGCATCTGAAGGAATCGAGTGATCCAATGATGGAGGGGGTTTTGGCAGAAACGGAGAACATGCTTGCACGGGGCAGAATGGATTTGCCTATCAGTCCATGCTTTGCTGCGAACAGAGACGATGATCTATTGTTGCATCAGTTGCTGAAGAGGGGCTCAGATCCAAATGAAACAGATAAAAATGGAAGGACGTCACTGCATATTGCCGCATCCAGAGGCAACGAACATTGTGTGGTTCTACTTCTTGAATATGGAGCCGATCCTAACAAAAAAGGAGATCCCGGTAATGGAGCATTGTAG 1788 0.443 MPAVRQKMKNLFAHSIFCSRGDEQEIELEHMSRDEGSHYSLVGAPLPSLGASAASTNRRPKLRSFIISPFNPRYRCWETFLVLLVFYTAWVCPFEFGFLNESKGPLAIADNVVNGFFAIDIVLTFFVAYLDKSSYLFIDKPKLIASRYAKTWLFFDVISTIPFELTRKVLPNSLQTYGLFNMLRLWRLRRVSALFARLEKDRNFNYIWVRCSKLICVVMFTVHFAACFMYFLAANHDIKTTWFSLVANGDQFHLWGHYVTSVYWALVTMSTVGYGDLHPVNTKEMTFDIFYIFYILGLNSYLIGNMTNMVVHLTSRTRKYRDTVQAASGFAQRNQLPVRLQEQMLAHLFMRYRTDLEGLQHQEVIDSLPKAIRSSISHHLFHSLVDKVYLFHGVSNDLLFQLVAEMNAEYFPPKEDVILQNEAPTDFYILVTGAAVVGEAKVGDVVGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFINLAHSNVGDGTIIMSNFLQHLKESSDPMMEGVLAETENMLARGRMDLPISPCFAANRDDDLLLHQLLKRGSDPNETDKNGRTSLHIAASRGNEHCVVLLLEYGADPNKKGDPGNGAL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0617 595 Pfam Ankyrin repeats (many copies) 534 578 IPR002110 GO:0005515
Lele26g0617 595 CDD CAP_ED 390 484 IPR000595 -
Lele26g0617 595 FunFam Potassium channel KAT3 76 312 - -
Lele26g0617 595 Gene3D Jelly Rolls 356 505 IPR014710 -
Lele26g0617 595 PANTHER POTASSIUM CHANNEL AKT1 36 592 IPR045319 GO:0005249|GO:0006813
Lele26g0617 595 SMART cnmp_10 390 496 IPR000595 -
Lele26g0617 595 PRINTS EAG/ELK/ERG potassium channel family signature 121 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele26g0617 595 PRINTS EAG/ELK/ERG potassium channel family signature 258 275 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele26g0617 595 PRINTS EAG/ELK/ERG potassium channel family signature 302 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele26g0617 595 PRINTS EAG/ELK/ERG potassium channel family signature 110 120 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele26g0617 595 PRINTS EAG/ELK/ERG potassium channel family signature 87 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele26g0617 595 Pfam Cyclic nucleotide-binding domain 410 483 IPR000595 -
Lele26g0617 595 SUPERFAMILY Voltage-gated potassium channels 69 311 - -
Lele26g0617 595 SUPERFAMILY cAMP-binding domain-like 315 499 IPR018490 -
Lele26g0617 595 FunFam Potassium channel KAT2 378 503 - -
Lele26g0617 595 Gene3D - 527 595 IPR036770 -
Lele26g0617 595 SUPERFAMILY Ankyrin repeat 532 592 IPR036770 -
Lele26g0617 595 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Lele26g0617 595 Pfam Ion transport protein 75 317 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele26g0617 595 ProSiteProfiles Ankyrin repeat region circular profile. 557 585 - -
Lele26g0617 595 SMART ANK_2a 557 586 IPR002110 GO:0005515
Lele26g0617 595 Gene3D - 76 312 - -
Lele26g0617 595 ProSiteProfiles cAMP/cGMP binding motif profile. 390 498 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0617 Lele-ChrLele26 3934824 3938663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0617 22 592 Ion Channels AT4G32500 65.758 0.0 801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0617 26 3934824 3938663 Lele27g1483 27 20863181 20867923 hybridization
Lele26g0617 26 3934824 3938663 Lele28g0601 28 3854795 3862432 hybridization