Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0608 ATGTCACACGCGCCGTGCACAGAGCTCGGTGTTGGGGATGACATAAAGCGTTTCGGCTATTTTGTTTGGGAGTGGTGTGATGAGTGGCAAGTTGCTTTTGCAGCAGCTGTGCTTAAGCTGACACCTTCAGAAGGACTTCTCGGGATAATCGTCATTGGCCAGGGATTTTCAATTCTGCACATCAGGTTAGTGAAGTCAAATGAGGTCATTTTAGTCACAAAGAGCAAGTTCCTTCTTGCCTGGGTATTTCTGAAGTTTGTCCTCTGCTGGATCAGGTCGTGGTTTGGTCTCAACAAGATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCTATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAGCAACAGCAGCCACAACCTCAGCAGCAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAACAGCAACAGCTGCAGCAGCAGCAGCAACAGCAACAACAGCAGCCCCAGCAACAGCAGCTTCCTCCGCAGCAGCAGAGAAGGGATGGGCCTCATCTCTTAAATGGAGGTACAAATGGGATAGTTGAGAACCCACTGATGCGGCAAAACCCTGGTACTGTGAATGCACTGGCCACAAAGATGTATGAGGAAAGGTTAAAACCGCCTCTTCAGAGGGATTCCTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCCATATTGAAGTCAGCTGCAGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGCGAGATGAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACTCTCAAGGGGTGGCCCCTTAAAGGGTTGGATCAACTACGCTCTAGTCTTCTCCAACCTCAAAAGGCTTTTATGCAGGGCCCTCAGCCCTTTCATCAACTTCAAATGTTGTCGCCACAACATCTTATGCTTGCTCAACAAAATCTTGCATCACCATCTGCCAGTGATGAAAATAGACGACTTAGAATGCTTTTGAATAATAGGAATATGGGCCTAAGTAAGGATGCTCTTTCAAACCCCATGGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGCCCTCTTTTGCCCCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACATCAGCAGCATCAACAACAGAATACCAATCCACAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAGTTTTAACATGCATCAGCAAGATAAAGCGGGGGGTATTAGTAGTGTCACAGCAGATGGGAGCATGTCAAACAATTTTAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCCGGTCCTGCCAATAGCTCAGGAACAGCAAATACAACTGGCCCGTCTCCAAGTTCAGCACCCTCAACCCCTTCGACTCATACTCCTGGAGATGTGATATCGATGCCTGCTGTGCCTCATAATGGTAGTTCTTCAAAGCCTCCTATGATGTTTGGCACTGACGGCACTGGAACTCTTACATCACCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTCGTTGATGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGTATGGATATAAGCAAAGGCTTCTCATTTGCCGAAGTCAATTCTGTACGAGCTAGTTCAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCCAAAAGCTACTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTCCAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACTCTTCGCACCTTCACAGGACATTCTGCGTCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTTATCTGCTCTTGTGATGGTGATGGCGAAATACGATATTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTCTAAGGGCGGCACTGCCCAGATGAGGTTTCAACCTCGCATAGGGAGGTATCTTGCCGCTGCTGCGGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAACATGCCAATATTCATTACAGGGGCATACAAAGCCAATACATTCTGTTTGCTGGGACCCTTCTGGGGACTTGCTTGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCTGGGAGTGAAGGGGAATGTGTCCATGAGCTCAGCTGTAATGGGAATAAATTTCATTCTTGCGTTTTCCATCCGACATATTTTTCGTTGCTGGTCGTTGGTTGTTACCAGTCTTTGGAGCTTTGGAACATGGCGGAGAACAAGACGATGACTCTATCAGCTCACGAAGGACTAATTGCTTCTTTGTCAGTCTCAAATGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2997 0.4601 MSHAPCTELGVGDDIKRFGYFVWEWCDEWQVAFAAAVLKLTPSEGLLGIIVIGQGFSILHIRLVKSNEVILVTKSKFLLAWVFLKFVLCWIRSWFGLNKMSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQQPQPQQQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQQQLQQQQQQQQQQPQQQQLPPQQQRRDGPHLLNGGTNGIVENPLMRQNPGTVNALATKMYEERLKPPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSAAASGQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEMNPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSSLLQPQKAFMQGPQPFHQLQMLSPQHLMLAQQNLASPSASDENRRLRMLLNNRNMGLSKDALSNPMGDVVSNVGSPLQAGSPLLPRGDTDMLMKLKLAQLHQQHQQQNTNPQQQQLQQHALSNQQSQTSSFNMHQQDKAGGISSVTADGSMSNNFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPPMMFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGFSFAEVNSVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKPKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRIGRYLAAAAENVVSILDVETQTCQYSLQGHTKPIHSVCWDPSGDLLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSLELWNMAENKTMTLSAHEGLIASLSVSNVTGLVASASHDKFVKLWK 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0608 998 ProSitePatterns Trp-Asp (WD) repeats signature. 775 789 IPR019775 -
Lele26g0608 998 PANTHER TRANSCRIPTION ACTIVATOR MSS11 98 998 - -
Lele26g0608 998 SMART Lish 107 139 IPR006594 GO:0005515
Lele26g0608 998 MobiDBLite consensus disorder prediction 514 638 - -
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 756 791 - -
Lele26g0608 998 MobiDBLite consensus disorder prediction 241 278 - -
Lele26g0608 998 ProSiteProfiles LIS1 homology (LisH) motif profile. 107 139 IPR006594 GO:0005515
Lele26g0608 998 Pfam WD domain, G-beta repeat 961 998 IPR001680 GO:0005515
Lele26g0608 998 Pfam WD domain, G-beta repeat 876 911 IPR001680 GO:0005515
Lele26g0608 998 Pfam WD domain, G-beta repeat 714 745 IPR001680 GO:0005515
Lele26g0608 998 Pfam WD domain, G-beta repeat 795 832 IPR001680 GO:0005515
Lele26g0608 998 Pfam WD domain, G-beta repeat 751 788 IPR001680 GO:0005515
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 966 998 - -
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats profile. 756 791 IPR001680 GO:0005515
Lele26g0608 998 Coils Coil 207 243 - -
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats profile. 966 998 IPR001680 GO:0005515
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats profile. 714 745 IPR001680 GO:0005515
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats profile. 799 841 IPR001680 GO:0005515
Lele26g0608 998 SUPERFAMILY WD40 repeat-like 709 998 IPR036322 GO:0005515
Lele26g0608 998 MobiDBLite consensus disorder prediction 514 620 - -
Lele26g0608 998 FunFam Transcriptional corepressor LEUNIG 693 844 - -
Lele26g0608 998 Gene3D - 690 847 IPR015943 GO:0005515
Lele26g0608 998 FunFam Transcriptional corepressor LEUNIG 845 998 - -
Lele26g0608 998 Pfam LisH 109 135 IPR006594 GO:0005515
Lele26g0608 998 Gene3D - 848 998 IPR015943 GO:0005515
Lele26g0608 998 CDD WD40 710 998 - -
Lele26g0608 998 SMART WD40_4 749 788 IPR001680 GO:0005515
Lele26g0608 998 SMART WD40_4 792 832 IPR001680 GO:0005515
Lele26g0608 998 SMART WD40_4 707 746 IPR001680 GO:0005515
Lele26g0608 998 SMART WD40_4 874 912 IPR001680 GO:0005515
Lele26g0608 998 SMART WD40_4 959 998 IPR001680 GO:0005515
Lele26g0608 998 SMART WD40_4 918 957 IPR001680 GO:0005515
Lele26g0608 998 MobiDBLite consensus disorder prediction 187 208 - -
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 921 IPR001680 GO:0005515
Lele26g0608 998 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 799 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0608 Lele-ChrLele26 3879238 3889134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0608 793 997 Miscellaneous Gene Families AT5G08390 25.238 6.96e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele26g0608 WD40 0.1 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0608 26 3879238 3889134 Lele01g0611 01 3585976 3589511 CCT
Lele26g0608 26 3879238 3889134 Lele02g0599 02 3588250 3597596 CCT
Lele26g0608 26 3879238 3889134 Lele03g0612 03 3598226 3605464 CCT
Lele26g0608 26 3879238 3889134 Lele04g0617 04 3728120 3735580 CCT
Lele26g0608 26 3879238 3889134 Lele27g1488 27 20917870 20925157 hybridization
Lele26g0608 26 3879238 3889134 Lele28g0595 28 3802471 3809445 hybridization