Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0604 ATGTCTATGCTGAGAATGCAGCATAACAATGCCAATCTCAGTTCTGCCCAACAGTCAATGAAACCAGTCTTTCATGACTTTATGGGCATGAAGCCCACTGATTTGCCCCTCGTTGCGGCTCATAAAACAGCTGATGCCAGGCCGTCGGAGGCGTCGCCATCGGTCTCTGTCGGCGCCTCTTCCGGTGTTGCCCGTGGCCCCCTCTCAACCACCTCTGATATCGCTTCTGAAAGACAGTTAGGAAATCACCTCGAGGGAGTCCCATTCTATTGCCCGAGGAGTGATCTTTCTGGCACTGAGATTAGTAACAGAATGGTAGGAAACAAGAGAAGTAATTCTGATTTTATGAGTTCCTCCAGAGATGCATTCCAAATGGTTCCTGACTCTCTTCAAAATTTGCATTTAATGAAGACCCTCCAGAATGCAGCTGGAGGAGAGCAGCATAGAAGGTCTAATGATGATAATATGTTTCTTGGTATGCAGTCAAGGAAGCCAACTTCTGGTTCTCACATATATCAGCATTCCACGGGCACCAAGACTGATGTCAATGAATGGGAGCGATCTATTCTCATGAATACTGGCCCTTCCATGCAACATCCACCACGTGGGGGTCAATTAGCTTTGCCTCTTGTGCACCAGATACCTTCTAACAAGAGCAGGGATGCTAATGCTGGTCCTTCATTTATTACTCAATCCGCTGCTGATGAAGGATCTAGAACAGGAATCAAGGGCCCTGGGATCTTGAGTTCTATGAACACTACCACTGCTGCTTATGAGAAATCTCTGTCTGCACTTGGCGGAAACAGGCCAAAGCCATTGACTGGTATAATAGACCCAGAATCTTCCATGCCTCCAAGTCAACAAGGGTTAGCATCTCCCAGCTGCCAGATGACTATTTTTTATGGAGGTCAAGCTCACGTTTTTGATAATGTCCACCCCAATAAGGCAGAAATTATAATGGCTTTAGCTGGGTCAAATGGTGGATGTTGGTCCACGACATACTCCCCAAAACCTGCTGTGAAGCTCACAAATGACAGTAACATGCTGTGTGGAGATAGTGAGACTGGTATAGTGAGTAAAATTACGCCCCCGCAGGAGCCTCATGGCAGATTATCTTTAGCAGGCACTTCGAGTCTTGCCATCAGATCTGGCAATCGATGGTCTAATCAAGCAGGGGCGCATCAGGGAAGCATCGTAGCCAATGAAGATGTTAGGAATTCAATTAAAGCATCAGATCCCACTTCTGAGGACAAAAGGACGCAATCACATTGA 1272 0.467 MSMLRMQHNNANLSSAQQSMKPVFHDFMGMKPTDLPLVAAHKTADARPSEASPSVSVGASSGVARGPLSTTSDIASERQLGNHLEGVPFYCPRSDLSGTEISNRMVGNKRSNSDFMSSSRDAFQMVPDSLQNLHLMKTLQNAAGGEQHRRSNDDNMFLGMQSRKPTSGSHIYQHSTGTKTDVNEWERSILMNTGPSMQHPPRGGQLALPLVHQIPSNKSRDANAGPSFITQSAADEGSRTGIKGPGILSSMNTTTAAYEKSLSALGGNRPKPLTGIIDPESSMPPSQQGLASPSCQMTIFYGGQAHVFDNVHPNKAEIIMALAGSNGGCWSTTYSPKPAVKLTNDSNMLCGDSETGIVSKITPPQEPHGRLSLAGTSSLAIRSGNRWSNQAGAHQGSIVANEDVRNSIKASDPTSEDKRTQSH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0604 423 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 173 363 IPR040390 -
Lele26g0604 423 ProSiteProfiles Tify domain profile. 290 325 IPR010399 -
Lele26g0604 423 SMART tify_2 290 325 IPR010399 -
Lele26g0604 423 Pfam tify domain 294 324 IPR010399 -
Lele26g0604 423 MobiDBLite consensus disorder prediction 49 69 - -
Lele26g0604 423 MobiDBLite consensus disorder prediction 390 408 - -
Lele26g0604 423 MobiDBLite consensus disorder prediction 42 69 - -
Lele26g0604 423 MobiDBLite consensus disorder prediction 390 423 - -
Lele26g0604 423 MobiDBLite consensus disorder prediction 409 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0604 Lele-ChrLele26 3850684 3854213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0604 21 370 Tify Gene Family AT4G32570 39.779 8.86e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele26g0604 tify 9.3e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0604 26 3850684 3854213 Lele01g0607 01 3569233 3573245 CCT
Lele26g0604 26 3850684 3854213 Lele02g0598 02 3580301 3584184 CCT
Lele26g0604 26 3850684 3854213 Lele03g0610 03 3587594 3591775 CCT
Lele26g0604 26 3850684 3854213 Lele04g0616 04 3722100 3725937 CCT
Lele26g0604 26 3850684 3854213 Lele27g1492 27 20946788 20950099 hybridization
Lele26g0604 26 3850684 3854213 Lele28g0591 28 3777548 3781128 hybridization