Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0576 ATGTGTGCTGCACGAGTGCACGTCGAATCTGCACACATTTATTTTCCTGAATGTGAAGCAATTGAGATCACAATTGTTATAGAAATGCTCTGTTTCTGTGCAAGACGGTGTAATCCTAAGCGATATTTTATCCGGCAGTTGAGACCCGCCTTTCTTTCTCCCAGTATGAGTAGGCCAACTACACGAAGTAAAAATAAAAGGCAAAGACAAGTGGATGATGGTGCTAGCACTTCTGAAATATGGAGGAAAATTCATGAAACAGGTGTGGTAACTGATGATGACATAAATCAACTTTATATGATTTGGAAGCCAATCTGTTCAAGCTGCCGTGTCAATGCCAAAGACAACCCTAATTGTTTTTGTGCGTTGGTTCCACCTCCCAATGGAAACCGGAAATCTGGCTTATGGCAGAAGATATCAGGTATTGTAGACAATCTTGGTCCTGACCCAACCAAGGACCTTCGTGCATGTGCTAATTCACCCTCTGGTCTTACAAATCTTGGGGCCACATGCTATGCCAATAGCATACTGCAGTGCTTATACATGAATAAATGTTTCCGGGAAGGCATATTTTCTGTAGAACCAGATCTTTTGCAACAGCAGCCAGTGTTAAATCAACTGGTGCGGCTTTTTGTGCAGTTGCACATTAGTAAAAGGGCTTTTGTGGATTCATTTCCGTTTGTCAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTTCTGACATTGCTTTTGTCTTTGCTTGAGCGTTGTCTAAGCCATTCTGAAGTTCCTAAAGCAAGAACAGTAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTCACAACCTGCTCACAATGTGGAAGAGACTCTGAAGCATCTTCTAAAATGGAAGACTTCTATGAGCTGGAGTTAAATGTCAAGGGATTTAAAAGTTTAGATGAGAGCCTGAATGATTATCTTGCCGTGGAGGAGCTTTGTGGGGATAATCAATATTTTTGCGCATCGTGTAAAACAAGAGTGGATGCTACACGTAGCATCAAGCTGCGCACATTACCTGGTGTACTTAATTTTCAACTTAAACGTTGTGTCTTCCTTCCAGAGACTACAACAAGGAAGAAAATTACTTCTGCATTTTCATTTCCAGCTAAGCTTGACATGCAGCCTAGATTGTCTGAACCATCTCAGTCTGAATTGATATATGACTTATCAGCTGTACTGATTCACAAGGGAACTACTGTTAATAGTGGCCATTATGTAGCTCACATCAAAGACGAGAATACTGGGCAATGGTGGGAGTTTGATGATGAGCTTGTCACTAAATTAGGCTGTCATCCATTTGGTGATAGATCTTCAAATTCTACGGCAAAATCTGTTAGGACTGATCCTGTTCATTCTGATGCCTCTGAAGTGAGTGTAGCTGACAGTAATGGAAATGGTCTAGATGCATCTCACTCACAATCTTCTCTTGTGGAGACATTTTCATCTAGTGATGCATACGTGTTGATGTACAATCTTAAGCATACAAAAAATGTACTCAGAATGGGGGATGTGCTCAGCAATGGCGATGCTGTTCCTGCACGAGATAGTTTTCCTTTTTTATCTCATCTTTTTGATGAGATTCAGAACCTTAATGCTTCATATGTTGATCAGTGCGCACAATACAATCATAGGAAAGAGTTGGAACTGAGTCGAATTAATGAAAGGAGACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTTGAGCAACCATTTTACTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCTGACAACATTAGTCCATGCACTCTTGACAATACATCCATTCAATGCTCACATGGGAAAGTTCCTGTATCCAAGGTTACTTCAATAAAGCGATTGTCCGATAAAGCATGGGATAAATTGTTTTCAAAGTATGGTGGGGGGCCTACACTGTCCCGTGGTGATTGCTGTTGTGATTGTCTTATTGATGGAGCTCACTGTGTGGTGTCAGCTGACACCTATCGGGACCGAAGAGAATCCATGAAGCAACTTGCACGGGACATTCTTGACGGAAATTGTCCAGATGGAAAGTATTATGTATCTAGACCTTGGTTGCAGCAGTGGTGGAAAAGAAAAGTACTTGATGCTCCATCTGAAGCAGATGCTGGACCAACATCATCAATTAGTTGCCCGCATGGGCAACTTTTACCTGAGCAAGCTCATGGTGCTAAGCGGGTGCTTGTTCCTGAGAATCTTTGGCACTTCTTATATGAAGATGCTCTTTCTGTAAAACCTAATTATGCTTTGGGTTGCCCAACATTTCCTTCAGACTCAATACCTTGTTCCCAATGCAGCGATGAATTATCTGAAGTAGCATGCTTGGAGGACTCTTTAAGATTAGTGAAGCAAGTGCAACGTCAGAATCATGAGAAACTATTACTGGCTAAAAGTATGCCACTCTCTTTGCATTGCAAATATTTCCTAGTGCCTTCTTCATGGATTTCAAAATGGAGAAGTTACATGAGTCCATCCGTCAAGAATTCAGACAAACCTGAAACTTTAGATGGGATAATCAATTCCCTTGTGTGTGAAAAGCACTCCCTCCTTGTGGAAAAGCCCCCAGAACTGGTTTTCAGACGCGGTGCTGTAGTCCAGCGAGAATCTTCTGCAGGGGGTTTAACTATGATATCTGCGAATGATTGGAAATGCTTTTGTGAGGAATGGGGTGGTACTGAGACAAAAGGTATATCAGCAACAATTGAGAATACCAGTGATTCAGAAAATATTTTGACTGGATTCAGCTCAGAGACAACGATGTGTGAGGATCAGTTAAATGACAAAGTGAATAATGATAGCGGGACTAGACAGCTGCTTATTAAGACTTGTCCAGAGATTTGTGAAACTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAGAAACTTAACTATAGCAATGAGAACATATCTGTGATTCTTGTAAGGGGAAAGGAAGTTCCTAGATCCATATTGGAGGCTTCAAAGGGCTTTGTTGAAACAGATCGACGTGTTTCCAAGCGCTCCCGGAAATCTAAAAATGGGACTTCGATAAGTCTTAAAGTTTCTGCTTCAACATCCCTGTACCAGCTAAAAATGATGATATGGGAGGCCTTTGGGGTTGTAAAGGAAAACCAGATATTACAGAAAGGTGACAGGACAATCGATAATGAGGATGAATGTGCTACGCTTGCAGATGTAAACATATTTGCCGGAGATCAGATTATAGTGAGGGACTCTGAGATCCATGAAAATAGAGATATTGCTGATGAGATTTATGATGATAAAATGGAAATGCAGCGGAGTGAGGGAGGGTTTCGGGGAACGCTTCTGACAGCAGACATTTCATCTCAGGTTGTTTGA 3390 0.4159 MCAARVHVESAHIYFPECEAIEITIVIEMLCFCARRCNPKRYFIRQLRPAFLSPSMSRPTTRSKNKRQRQVDDGASTSEIWRKIHETGVVTDDDINQLYMIWKPICSSCRVNAKDNPNCFCALVPPPNGNRKSGLWQKISGIVDNLGPDPTKDLRACANSPSGLTNLGATCYANSILQCLYMNKCFREGIFSVEPDLLQQQPVLNQLVRLFVQLHISKRAFVDSFPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSEVPKARTVVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGFKSLDESLNDYLAVEELCGDNQYFCASCKTRVDATRSIKLRTLPGVLNFQLKRCVFLPETTTRKKITSAFSFPAKLDMQPRLSEPSQSELIYDLSAVLIHKGTTVNSGHYVAHIKDENTGQWWEFDDELVTKLGCHPFGDRSSNSTAKSVRTDPVHSDASEVSVADSNGNGLDASHSQSSLVETFSSSDAYVLMYNLKHTKNVLRMGDVLSNGDAVPARDSFPFLSHLFDEIQNLNASYVDQCAQYNHRKELELSRINERRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADNISPCTLDNTSIQCSHGKVPVSKVTSIKRLSDKAWDKLFSKYGGGPTLSRGDCCCDCLIDGAHCVVSADTYRDRRESMKQLARDILDGNCPDGKYYVSRPWLQQWWKRKVLDAPSEADAGPTSSISCPHGQLLPEQAHGAKRVLVPENLWHFLYEDALSVKPNYALGCPTFPSDSIPCSQCSDELSEVACLEDSLRLVKQVQRQNHEKLLLAKSMPLSLHCKYFLVPSSWISKWRSYMSPSVKNSDKPETLDGIINSLVCEKHSLLVEKPPELVFRRGAVVQRESSAGGLTMISANDWKCFCEEWGGTETKGISATIENTSDSENILTGFSSETTMCEDQLNDKVNNDSGTRQLLIKTCPEICETCIGERESCELMQKLNYSNENISVILVRGKEVPRSILEASKGFVETDRRVSKRSRKSKNGTSISLKVSASTSLYQLKMMIWEAFGVVKENQILQKGDRTIDNEDECATLADVNIFAGDQIIVRDSEIHENRDIADEIYDDKMEMQRSEGGFRGTLLTADISSQVV 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0576 1129 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 116 505 - -
Lele26g0576 1129 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 162 505 IPR028889 -
Lele26g0576 1129 Gene3D - 794 913 IPR035927 -
Lele26g0576 1129 FunFam ubiquitin carboxyl-terminal hydrolase 48 149 505 - -
Lele26g0576 1129 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 399 417 IPR018200 GO:0004843|GO:0006511
Lele26g0576 1129 CDD Peptidase_C19L 163 502 IPR033841 GO:0004843
Lele26g0576 1129 MobiDBLite consensus disorder prediction 449 483 - -
Lele26g0576 1129 Pfam Ubiquitin carboxyl-terminal hydrolase 163 502 IPR001394 GO:0004843|GO:0016579
Lele26g0576 1129 SUPERFAMILY Ubiquitin-like 1021 1090 IPR029071 -
Lele26g0576 1129 SUPERFAMILY Cysteine proteinases 161 506 IPR038765 -
Lele26g0576 1129 Gene3D - 1018 1089 - -
Lele26g0576 1129 Gene3D - 554 653 IPR035927 -
Lele26g0576 1129 CDD Ubl_USP48 1019 1120 IPR044743 GO:0004197|GO:0004843|GO:0016579
Lele26g0576 1129 ProSiteProfiles DUSP domain profile. 562 653 IPR006615 GO:0004843
Lele26g0576 1129 ProSiteProfiles DUSP domain profile. 669 776 IPR006615 GO:0004843
Lele26g0576 1129 MobiDBLite consensus disorder prediction 54 76 - -
Lele26g0576 1129 MobiDBLite consensus disorder prediction 468 483 - -
Lele26g0576 1129 FunFam Ubiquitin carboxyl-terminal hydrolase 26 553 651 - -
Lele26g0576 1129 Gene3D Cysteine proteinases 149 505 - -
Lele26g0576 1129 SUPERFAMILY DUSP-like 690 755 IPR035927 -
Lele26g0576 1129 SMART dusp 580 656 IPR006615 GO:0004843
Lele26g0576 1129 ProSiteProfiles DUSP domain profile. 797 917 IPR006615 GO:0004843
Lele26g0576 1129 Coils Coil 1128 1129 - -
Lele26g0576 1129 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 163 178 IPR018200 GO:0004843|GO:0006511
Lele26g0576 1129 SUPERFAMILY DUSP-like 564 652 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0576 Lele-ChrLele26 3665966 3674442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0576 160 434 Miscellaneous Gene Families AT4G31670 30.640 1.21e-25 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0576 26 3665966 3674442 Lele27g1515 27 21103952 21110293 hybridization
Lele26g0576 26 3665966 3674442 Lele28g0565 28 3600458 3608422 hybridization