Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0570 ATGTTCTCCAGCAGCCAGCTTGATGCCACTGCCGCCTTCGCAGGCGGCGGATTCATGGCCACAGAGTCTACCCAGCTCAACGATTCATCTCCGTTACCGGCCAAAAGCCGTGAGACTCAGGGTTTAGTTCCGGTAACAGGGAAGCAGATAAGCGAAGCCTCTCAATCCGGCGATGAAAAGTCGAATTTCCTAATCAACGGCGTGGATGTTACCAATGTAACCTTGGTTGGTATGGTGTTTGAGAAAGTTGACCGAAACACTGACGTTAGTTTTGTTCTAGATGATGGAACAGGAAGGATCAAATGTCGAAGATGGGTGAATGAGCCTTTTGATACAAAGGAAATGGAAGAAATACGAGATGGTATGTATGTTCGTGTGTATGGGCATTTGAAAAGCTTTCAAGGTGTAAAACAGGTTGTTGCTTTCTCAATCAGGCCAGTGATGAGCTTTGATGAGATTTCTTTTCACTTTATTGATTGCATACATAATCATCTCCGCTCCAAAGTAAAGGTTGAAGGAGCTACTCCCACACGTCCTCCACCTATAAACTCATTTCATGCATCAAACGGAAATCAAGCACCATCATCTAATCCATTATATGCTCAATATAGCATGGATGGGCTTAAGGATTGTGATAAATTGGTCCTTGATTATCTGAATCAGCATTCAGACGTGTCTGATGAAAGGGGAATACATGTTAATGAGCTGTCTCGAGAACTTAAACTTCCATGGGACAAGATCATGTTGTCATTGAAGACTCTTGGCGATGATGGACTTGTATACTCCACCATTGATGACAATCATTACAAGCAAGCTTGA 819 0.4322 MFSSSQLDATAAFAGGGFMATESTQLNDSSPLPAKSRETQGLVPVTGKQISEASQSGDEKSNFLINGVDVTNVTLVGMVFEKVDRNTDVSFVLDDGTGRIKCRRWVNEPFDTKEMEEIRDGMYVRVYGHLKSFQGVKQVVAFSIRPVMSFDEISFHFIDCIHNHLRSKVKVEGATPTRPPPINSFHASNGNQAPSSNPLYAQYSMDGLKDCDKLVLDYLNQHSDVSDERGIHVNELSRELKLPWDKIMLSLKTLGDDGLVYSTIDDNHYKQA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0570 272 Gene3D - 202 272 IPR036388 -
Lele26g0570 272 Pfam OB-fold nucleic acid binding domain 73 146 IPR004365 GO:0003676
Lele26g0570 272 Pfam Replication protein A C terminal 177 267 IPR014892 -
Lele26g0570 272 PIRSF RPA32 1 272 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele26g0570 272 CDD RPA2_DBD_D 72 165 - -
Lele26g0570 272 PANTHER REPLICATION PROTEIN A-RELATED 6 270 IPR040260 -
Lele26g0570 272 SUPERFAMILY "Winged helix" DNA-binding domain 205 270 IPR036390 -
Lele26g0570 272 FunFam Replication protein A 32 kDa subunit 203 272 - -
Lele26g0570 272 Gene3D - 38 168 IPR012340 -
Lele26g0570 272 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Lele26g0570 272 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Lele26g0570 272 MobiDBLite consensus disorder prediction 22 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0570 Lele-ChrLele26 3629969 3633483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0570 1 270 Core DNA Replication Machinery Family AT2G24490 46.909 8.52e-90 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0570 26 3629969 3633483 Lele27g1523 27 21164029 21166913 hybridization
Lele26g0570 26 3629969 3633483 Lele28g0559 28 3562530 3565499 hybridization