LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g0565	ATGGATGATTATTCTGGTAAACGAGCCATAGATGGGGTGGTAGTACCTAAAAAGGGGATGGCTCATGTGTTTAGAGATACTGCTAATGCTAGAGACCGTAATGGCCAGTTTTGCAGCCCACCTGGTTGCAGTAGTAAAGTGAATTCTCCTAAGGGTGCTCAATTTGGTTCATCTGAAAAAGGTAAATCTTCGAGGCCTCCAATCCGATCTTCAAGTCGTAAGGAAGCAATTGGAAGTTCCTCTAGAACTTTACCAGGGTCTTATAACCCAGGAAAATCCCCTATGGAGCCCCGGAAAACAGTATCCTGTCAATCATCAGAGACTGTTCCATGTGAAACGATTAGTTTACAGGATGAAACGGAAAATTCTGAGCTCATCCCACCACCTGAAAAAATTCAAAGAGGGCCTCAAGCTGAAGTGGGGAGTTCAGAGTCTGCTAATATCATATCAGTGGAAGTAGGAAGCTCTAGTGTAGCATCAAACGCAACATATAGGAGGAATCTTCGTCAGAAGCCTGGATTGAATGTTCTAGAATTTAAAAGCTCTGGCTCAGTGACACGCACTGGAGGTAGCAGGTATGGGTTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATCCCTTCAGGTTGTTCATCATCAGAATCAAATCCGAATAGAAGGAAAGATGTGATGAAAAAGAGAAACTGTGAAGGAGAAACTAGTTCTACTACTAGAGGTAAGAAGATGAGTGGATCTTCAATGGACGGACAAAATTCTGGCCCCAGAAATGGTATATCTATATCAGATTCAAGAAGAACCAGAAACTTTCCTCCTCACAGGGATAACAACAACATTGGATCAGTTAGAACTAGAAGATCTTTCAATGGTCATGCCAGGGGAAGGCTTCCTAGCCAAGCAAATGAAAACCCTGCACCACCCAATGAGTCCCCAATTACTATACCATCTTTGCCTCATTCCAGTGACCTTAGTGCTCATGATTTATTACATCATTCCTCGTTGGAGACTCCCCTCAGAAGTCCAAGATCTTACAGTAGACCAGGAAGCAGCAGTGAGCGGTTATTTGGCGTTTTGCCCCCATCTCCTTCAGAATATGGGATCACTCGTTCTCTCCTGAACTGGGACAGCTTTCGACGATACAACATGGATGGTATTGCAGAGGTATTATTGTCATTTGAGAGGATTGAACAAGATGAGGATCTTACACATGAGCAAATTCTTTTATTGGAGACCAACCTGTTCCTTAATGGACTAAACTTCTATGATCAACATAGAGAAATGCGCTTGGATATCGATAATATGTCATACGAGGAACTATTGGCTTTGGAAGAGACGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCACTCTCAGAATGCTTAAAGAGAAGCTCGTATCAACCTGCCACTTCAGAGGATGCAGGCGAGAGCTGCAATGAGAATAATGATGACATAAAATGCAGCATCTGCCAGGAGGAATATGTGGAAGCAGATGAAGTGGGGAGTCTGCAATGCGAGCATAGATATCATGTGGGGTGCATACAGCGATGGCTGCGCGTCAAGAACTGGTGTCCTATTTGCAAAGCCCCTGCGGCCCCATCACTTTCGTCTTCTTGA	1620	0.4401	MDDYSGKRAIDGVVVPKKGMAHVFRDTANARDRNGQFCSPPGCSSKVNSPKGAQFGSSEKGKSSRPPIRSSSRKEAIGSSSRTLPGSYNPGKSPMEPRKTVSCQSSETVPCETISLQDETENSELIPPPEKIQRGPQAEVGSSESANIISVEVGSSSVASNATYRRNLRQKPGLNVLEFKSSGSVTRTGGSRYGLRNLRCNSISDVIPSGCSSSESNPNRRKDVMKKRNCEGETSSTTRGKKMSGSSMDGQNSGPRNGISISDSRRTRNFPPHRDNNNIGSVRTRRSFNGHARGRLPSQANENPAPPNESPITIPSLPHSSDLSAHDLLHHSSLETPLRSPRSYSRPGSSSERLFGVLPPSPSEYGITRSLLNWDSFRRYNMDGIAEVLLSFERIEQDEDLTHEQILLLETNLFLNGLNFYDQHREMRLDIDNMSYEELLALEETMGSVSTALTEEALSECLKRSSYQPATSEDAGESCNENNDDIKCSICQEEYVEADEVGSLQCEHRYHVGCIQRWLRVKNWCPICKAPAAPSLSSS	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g0565	539	Pfam	Ring finger domain	487	529	IPR001841	-
	Lele26g0565	539	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	79	533	IPR045191	GO:0061630
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	27	143	-	-
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	219	235	-	-
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	32	65	-	-
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	336	350	-	-
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	206	357	-	-
	Lele26g0565	539	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	465	536	IPR013083	-
	Lele26g0565	539	ProSiteProfiles	Zinc finger RING-type profile.	488	529	IPR001841	-
	Lele26g0565	539	SMART	ring_2	488	528	IPR001841	-
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	98	122	-	-
	Lele26g0565	539	FunFam	E3 ubiquitin-protein ligase arkadia	450	534	-	-
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	73	88	-	-
	Lele26g0565	539	MobiDBLite	consensus disorder prediction	236	266	-	-
	Lele26g0565	539	SUPERFAMILY	RING/U-box	482	534	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g0565	Lele-ChrLele26	3591178	3593374	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g0565	385	532	C3H Transcription Factor Family	AT2G15530	41.611	4.53e-34	135

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele01g0588	01	3458821	3461920	Lele26g0565	26	3591178	3593374	CCT
	Lele02g0580	02	3473484	3476685	Lele26g0565	26	3591178	3593374	CCT
	Lele03g0591	03	3485374	3489353	Lele26g0565	26	3591178	3593374	CCT
	Lele04g0596	04	3617856	3621033	Lele26g0565	26	3591178	3593374	CCT
	Lele26g0565	26	3591178	3593374	Lele27g1528	27	21206669	21209995	hybridization
	Lele26g0565	26	3591178	3593374	Lele28g0555	28	3525372	3528405	hybridization