Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0551 ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCCTTGCTACAGCAACAGCAGATGTATCATCCAGGGATGCTAGCCGCTACTATGTCCCAGATTGAGCCTATTCCAAGTGGAAATTTGCCTCCGGGATTTGACACTTCTACATGCCGCAGCGTTTATGCAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAAAGTGCTGGTCCTCTCGCAGGGTGCAAGCTCATAAGGAAAGAAAAGTCCTCGTATGGTTTTGTGGATTACCATGACAGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGCCAACTCTATGGTCAGGCACTTAAGGTGAATTGGGCATATGTCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGTTATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCTCAAAATGCCATCAATGATATGAATGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACCAAGGGCGCTGGTATGAGTACCAATGAGGAGAAGAACAATGACACCCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGGTTATCTCATTTGCTTGAATTTGCTGTACATGCCATGTAATTCACAATGTATGATGGAGCATGCTCACATGCAAGCATATGGAGGTCAGGAATATAATAATGAGGATGCTCCTGAAAACAGTCATGCCTATACCACCGTTTATGTTGGCAACCTTCCCCATGATGTAACGCAAAATGAACTCCACTATCATTTCCACGCATTGGGGGCTGGAGTGATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTAAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATACTTCGTGGAAAAACAATGAAGGTGAGAAGTCGTCTTCTTTTTGCTTATATGTGTTCGTGGGGTAACAAGCCAACACCTCCTGGAACAGCTTCAAACCCACTACCTCCTCCTACACAACCTTATCAAATCCTTCCCACAACAAGGATGAACCAAGGCTATTCTCCTACTGAGTTATTGGCTTATCAGCGCCAACTGGCCTTAAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTGTGCATATGACTGGTCAACATGGCCTTGCTGCTGCCTCCATTAACTTAAGCTCTGGGGCATCCCAAGCCATGTATGATGCATATTCTGGTAATTCTTCAAGGCAGCACCTCATGTACTATCGTTGA 1413 0.4452 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAATMSQIEPIPSGNLPPGFDTSTCRSVYAGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYVNTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMNGKWLGNRQIRCNWGTKGAGMSTNEEKNNDTQNAVVLTNGSSGYLICLNLLYMPCNSQCMMEHAHMQAYGGQEYNNEDAPENSHAYTTVYVGNLPHDVTQNELHYHFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGRILRGKTMKVRSRLLFAYMCSWGNKPTPPGTASNPLPPPTQPYQILPTTRMNQGYSPTELLAYQRQLALSQAAVSGLSGQALVHMTGQHGLAAASINLSSGASQAMYDAYSGNSSRQHLMYYR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0551 470 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 357 - -
Lele26g0551 470 Gene3D - 267 361 IPR012677 -
Lele26g0551 470 FunFam Nucleolysin TIAR-like protein 139 237 - -
Lele26g0551 470 SUPERFAMILY RNA-binding domain, RBD 39 131 IPR035979 GO:0003676
Lele26g0551 470 CDD RRM2_PUB1 141 215 - -
Lele26g0551 470 Gene3D - 139 218 IPR012677 -
Lele26g0551 470 CDD RRM3_TIA1_like 288 372 - -
Lele26g0551 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Lele26g0551 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 356 IPR000504 GO:0003723
Lele26g0551 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Lele26g0551 470 SMART rrm1_1 141 214 IPR000504 GO:0003723
Lele26g0551 470 SMART rrm1_1 56 125 IPR000504 GO:0003723
Lele26g0551 470 SMART rrm1_1 289 358 IPR000504 GO:0003723
Lele26g0551 470 SMART rrm2_1 141 214 IPR003954 GO:0003676
Lele26g0551 470 FunFam Nucleolysin TIAR-like protein 1 138 - -
Lele26g0551 470 Gene3D - 1 138 IPR012677 -
Lele26g0551 470 SUPERFAMILY RNA-binding domain, RBD 133 221 IPR035979 GO:0003676
Lele26g0551 470 SUPERFAMILY RNA-binding domain, RBD 272 358 IPR035979 GO:0003676
Lele26g0551 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Lele26g0551 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Lele26g0551 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 358 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0551 Lele-ChrLele26 3493293 3498645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0551 47 357 Eukaryotic Initiation Factors Gene Family AT1G49760 26.316 5.66e-23 100