Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0522 ATGGCGACACCATCTTTGGACGAAGAAACCGCTAAGAAAGTGATACGACAAGTTGAGTTCTACTTCAGTGACAGCAACCTTCCTATGGACAATTTTCTCCAGAAGTGTATAGGTGAAAGTGAAGATGGCAGTATCCTTGTTTCTCTTCGATTATCCTGCTTATTGCTTGCTATTGTTACTTTTTGCTGTGTTTATTTAGTTCTGAGTATCACTCATGACCCCAAGTTAGTTGCCTATTGGTTATTTTGCCGGCAACAATACAAAGTGGTTAGTTTGGCTTTGATTTGTTCTTTTACTCGGATGAGAAAACATCTTAATCTGGACGATGTAAAGCCGGATGAAGTCCCCGAAGAGACTGTGAAAGCTGTTGCTGAAACTTTGAGGAAATCAGAATCACTTAAGATCTCCGAGGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCTGAAACCAGAAGAGGTAATTGAGCAGGTGGACATCAGAACAATAGCTGCATCACCATTTGAACATGATGTGAAGCGAGAAGATATAGAGGCATTCTTTGGTCAATCTGCCAAGGTTAATAGTGTCAGGCTTCCTCGTCATGTTGGAGACAAAAGATTCTTCTGTGGCACAGCTCTCATCGAGTTTGCAGAAGAACAAGATGTTGAAAAAGTTTTGGGGCAAAAGTTGGTCTATGCTGGAGCCGCTTTAGAATTGAAGTTAAAGAAAGACTTTGATGCAGAGAGAGCAAAGGAGTTAGAAGAAAAATCTGGTGCCCATATGGGTTCAAATCACCCGAATAAGTCAAATGCTGACACAGGCTACCCCAAGGGCTTAATTATTTCCTTCAAGCTAAAACGCATTTCAGATGATGTTTCTCTGGGGCAAAATGGTGCTCATCAAGAAGCCAATGGCGACAGTAGTGTCTCTGACAAAGAGGAACAAAAACCCTCAGAAGGTGGTGTTGAGGAGAGTAATGAACAAAAGGTATCAGATAATACTGACAATGATAAAGAACATCGAGAGGTCAGGGAAGGAAATGAAGCTAAAGGTGAAGAGAAGATTCAAGAAAATGAAATAAAACTTTTAGCCAAAGCTTTCAAGGACAACATGGATGTTGTGTTACGTGAGGATTTGAAGGGTGTCTTTGAGAAGTTTGGTTCTGTGAAGTACGTTGATTTCAAGATTGGAGAAGAGTCAGGATACATCCGGTTTGAAGAACCTGAAGCTTCTCAAAAAGCTCGTGCTGCTGCGGTTCTTGCTGAAAAGGGGGGTTTGGCTGTGAAGAATTTTATTGCTACTCTAGATCCAGTTTCTGGCGATGCTGAAAGGGAATACTGGAGCCTTCTCCGTGGTAATCAAGAAAAGCGCCGAGACAATAACACCCGAGGAAGATCCTCCTTGCAATTGTTTGGATCTTCGAATGCGACAACGCCTGCTTCATACGACGGGCTCAGTGATGGTGCCCAGAAAATAAGAGCACTGCATGGGCGGACAACTGGCCCTACAAGGCGTTCTACCAAAGGACAGTGGACGCCTGAAGAGGATGACATTTTGCGGATGGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAAAAGATAGCGGAGTGCTTTAAGGATAGAACAGATGTACAATGCCTACATAGGTGGCAAAAAGTCTTAAACCCCGAATTGGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATAATTGATTTAGTGAATAAATATGGGCCAAAAAAGTGGTCAACCATCGCACAGCACCTACCTGGACGCATAGGTAAACAATGCCGAGAAAGGTGGCACAATCATCTTAATCCTACTATAAACAAGGAAGCGTGGACGTATGAAGAGGAGCTGGCTCTAGTACGTGCTCATCAAATTTATGGGAACAGATGGGCAGAATTGACAAAGTTCTTGCCTGGAAGGACGGACAATTCTATAAAAAATCACTGGAACAGTTCAGTAAAAAAGAAATTGGATTCTTACTTGGCATCAGGTTTGCTTACTCAATTCCAAGATGTACCCCTTGTTGGACATCCAAATCAACCGGTGGTTTCTACGTCTTCAAGGCGGCAGTATAGTGGAGATGAAAATGGTTATAAGGGCACTGAAGGAGAGGAAGTTTCCGAGTGTAGCCAAGAGTCAGCTAATGTTAGTTGCTTCCCATCTGCTAGAGATATGACCGATGTTATATTAAATACTACAGAGGAACTAAAGCCAAGTGAAGATATCAGTCTGGGAAAGGCGCACAGTCCTAGTCGAGCATCATGTCTAGACCCATATTGCATATCTCTGGATGACGTTACAATATCCATTCCGGACGTTGCTCATGAAGATGATTCTTGTTCTGGTTTCATTGAGCAAACATACTCACATGATCCAGGAAATTCTGCAAGCAGGGATACTCAGTTTACCTTACATGCCCTCCCTAACATTTCTTCATCAGACTTGGATCAAGAATGTTTACTTCAGCGAAGGGACAGTGAAGATTGCGCTGAAAGCCATGACATTGTAAGCGTTCCATTGCATCATACTTCAGTGGGATTAGGTATTTCAGCATCCATGGGACCCCCATCAATAGATCCTGCGAAACAAGACCACATGTTAATATCTAGCGAAGAATGTTATAGAGTCCTATATTCAGAGGCAATAAATGATGGATGCTTTTCTTCAGGAGATTATAACAAAAATGTAAATACAGTTTCATCCGGATTCATTACATTATTTGGCCAATCATCTGACCTCCATATACCTGAGACTGGTGGAACCTCAACTTCATTCCAAACTTGTCCCGTAAAATCTAATGATTTAAAAGGATCTTCATGCTCTCAATCTCCGATGCTTTCTGCTAATGATTGGAGATTAGTGTATACAGCTGAAGCCAATAATCTATTTGGTGCTGATGATCTGCAATTTGTCTCCAGAGCTCAGGATAGCTTCATTTATGCTAACAACTCATCTGTTGCTCCTTGTATGGATGCTATAAATAGTGGAGAAATGCACGAGGGACAAGATACTGTGAAGGATGCTTCAAGATGGGTGCCTGTAAATACATTTGGCTGTGCATCAGATGCTAAGCGTACTTGTCCAATGGAAGAAAGGACCGATGTGCATATAGAACAGTCAGAGACCGGAGCCCTATGTTATGAACCGCCTCGATTCCCAAGTTTGGATATTCCCTTCTTAAGCTGTGATCTTATACAATCAGGAGGGGATATGCAACAAGAATTTAGTCCTCTGGGTATCCGCCGGCTTATGATGTCATCTATGAACTGTCCAACTCCCCTGAGGCTGTGGGATTCACCTTCTCGTGGTGATAGCCCAGATGCCTTGTTGAAAAGTGCTGCTAAAAATTTCACTGGTACACCATCCATATTGAAGAAACGACACCGAGACTTGTTGTCGCCTCTATCGGATAAGAGAATCGACAAGAAACTTGAGACTGACTTGACGTCCACGTTGGTTACACATTTTTCACGTTTGGAAGTCATGTTTGATGATAATGAGACTCGGGAAGTAGATATGCTTTCTCAACCTTTAACGGAGAACGAGAAATCTGAAGCAACTGTTGAGGATCCCAAAAATTGTGGACAATCTTTGGAAGGAGAACATGCTGGGGGAAGAAATGAATCTACACTTAGCAACAAAAAGTCAGAAAAAGAGACAGCTGACAGCGATCCTCAGGATTTCCAACGACCTTCTTACGATGATTCGAAGATGAAGGTTGATTGTGACGTGGATAAAGCAGCTGAGATTGTGCAACAACCTTCCGGAGTCTTGATTGAACATGATATGAACGACTTGCTATTATATTCTCCTAATCAAATGTGTTTCAAACTAGACAGAACTCATTGTTCAAGTGCTAAAACTCCAAAAAACATGAACAACAGAAGTTTGGAAGCATCTTTAAATAAGAGCATTTCTTCACATCCATGGCCAAGCGATGGCTTCCCTTCTGTTCGTGCAAAAAATCTTGACGTTTCTTCATTTCCAGTTACTTGCGCATCATCTCTTTGTTCATCAGCACCTGCCGAGAACCTTGGTGATCAGCCCGGAAATGATGCTGGTTTCGACACATTTAGCATAAGCATTGAATCACCTTCAGCATGGAAGTCTCCCTGGTTGATGAACACTTTCTTGCCAAGCCCCAGACTTGATACTGAAATAACAATCGAGGATTTTGGGTTTTTCATGAGCCCCCGCGATAGGAGCTATGATGCGATTGGGTTGATGAAACAGGTGAAGGAACAAACTGGGGCTGCGTATGCTAATGCTCAGGAGATTTTGAGAAGTGTAACTCCCAAAGCAAAAGATTCATCTGGAAATGTCAGGGACACAGTCCGGGAAAGCAAGGATAATCTTGATCAGCCCGTGAATCATTCTCAGGTGCCCCGAAATGCATTGGTAGAGCGACGCAAACTTGATTTCAGTGAGTGTAAAACACCAGGGAAGGAGGGCAACGGCAAAGCCTCTGCTCAGACCTTCTCAAGCCCTTCGTCATATTTGTTGAAGGGATGTAGATAG 4512 0.426 MATPSLDEETAKKVIRQVEFYFSDSNLPMDNFLQKCIGESEDGSILVSLRLSCLLLAIVTFCCVYLVLSITHDPKLVAYWLFCRQQYKVVSLALICSFTRMRKHLNLDDVKPDEVPEETVKAVAETLRKSESLKISEDGKKVGRTTELLKPEEVIEQVDIRTIAASPFEHDVKREDIEAFFGQSAKVNSVRLPRHVGDKRFFCGTALIEFAEEQDVEKVLGQKLVYAGAALELKLKKDFDAERAKELEEKSGAHMGSNHPNKSNADTGYPKGLIISFKLKRISDDVSLGQNGAHQEANGDSSVSDKEEQKPSEGGVEESNEQKVSDNTDNDKEHREVREGNEAKGEEKIQENEIKLLAKAFKDNMDVVLREDLKGVFEKFGSVKYVDFKIGEESGYIRFEEPEASQKARAAAVLAEKGGLAVKNFIATLDPVSGDAEREYWSLLRGNQEKRRDNNTRGRSSLQLFGSSNATTPASYDGLSDGAQKIRALHGRTTGPTRRSTKGQWTPEEDDILRMAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPTINKEAWTYEEELALVRAHQIYGNRWAELTKFLPGRTDNSIKNHWNSSVKKKLDSYLASGLLTQFQDVPLVGHPNQPVVSTSSRRQYSGDENGYKGTEGEEVSECSQESANVSCFPSARDMTDVILNTTEELKPSEDISLGKAHSPSRASCLDPYCISLDDVTISIPDVAHEDDSCSGFIEQTYSHDPGNSASRDTQFTLHALPNISSSDLDQECLLQRRDSEDCAESHDIVSVPLHHTSVGLGISASMGPPSIDPAKQDHMLISSEECYRVLYSEAINDGCFSSGDYNKNVNTVSSGFITLFGQSSDLHIPETGGTSTSFQTCPVKSNDLKGSSCSQSPMLSANDWRLVYTAEANNLFGADDLQFVSRAQDSFIYANNSSVAPCMDAINSGEMHEGQDTVKDASRWVPVNTFGCASDAKRTCPMEERTDVHIEQSETGALCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRRLMMSSMNCPTPLRLWDSPSRGDSPDALLKSAAKNFTGTPSILKKRHRDLLSPLSDKRIDKKLETDLTSTLVTHFSRLEVMFDDNETREVDMLSQPLTENEKSEATVEDPKNCGQSLEGEHAGGRNESTLSNKKSEKETADSDPQDFQRPSYDDSKMKVDCDVDKAAEIVQQPSGVLIEHDMNDLLLYSPNQMCFKLDRTHCSSAKTPKNMNNRSLEASLNKSISSHPWPSDGFPSVRAKNLDVSSFPVTCASSLCSSAPAENLGDQPGNDAGFDTFSISIESPSAWKSPWLMNTFLPSPRLDTEITIEDFGFFMSPRDRSYDAIGLMKQVKEQTGAAYANAQEILRSVTPKAKDSSGNVRDTVRESKDNLDQPVNHSQVPRNALVERRKLDFSECKTPGKEGNGKASAQTFSSPSSYLLKGCR 1503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0522 1503 ProSiteProfiles xRRM domain profile. 348 470 IPR014886 GO:0003723
Lele26g0522 1503 SMART la 8 145 IPR006630 -
Lele26g0522 1503 Gene3D - 607 666 - -
Lele26g0522 1503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Lele26g0522 1503 CDD SANT 505 548 IPR001005 -
Lele26g0522 1503 CDD SANT 608 648 IPR001005 -
Lele26g0522 1503 Gene3D - 2 149 IPR036388 -
Lele26g0522 1503 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 605 655 IPR017930 -
Lele26g0522 1503 Pfam Myb-like DNA-binding domain 606 648 IPR001005 -
Lele26g0522 1503 Pfam Myb-like DNA-binding domain 554 600 IPR001005 -
Lele26g0522 1503 Pfam Myb-like DNA-binding domain 502 548 IPR001005 -
Lele26g0522 1503 Gene3D - 154 251 IPR012677 -
Lele26g0522 1503 Gene3D - 340 459 IPR012677 -
Lele26g0522 1503 CDD RRM2_La_like 366 429 - -
Lele26g0522 1503 SMART rrm1_1 162 234 IPR000504 GO:0003723
Lele26g0522 1503 SMART rrm1_1 355 423 IPR000504 GO:0003723
Lele26g0522 1503 MobiDBLite consensus disorder prediction 1437 1451 - -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 449 469 - -
Lele26g0522 1503 CDD RRM1_La 162 234 - -
Lele26g0522 1503 Coils Coil 230 250 - -
Lele26g0522 1503 ProSiteProfiles Myb-like domain profile. 601 651 IPR001005 -
Lele26g0522 1503 ProSiteProfiles Myb-like domain profile. 497 548 IPR001005 -
Lele26g0522 1503 FunFam Transcription factor MYB3R-2 607 669 - -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 674 705 - -
Lele26g0522 1503 SUPERFAMILY Homeodomain-like 503 558 IPR009057 -
Lele26g0522 1503 SMART sant 605 653 IPR001005 -
Lele26g0522 1503 SMART sant 501 550 IPR001005 -
Lele26g0522 1503 SMART sant 553 602 IPR001005 -
Lele26g0522 1503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 220 IPR000504 GO:0003723
Lele26g0522 1503 CDD SANT 556 600 IPR001005 -
Lele26g0522 1503 CDD LA_like_plant 10 144 - -
Lele26g0522 1503 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 497 548 IPR017930 -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 1209 1234 - -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 300 347 - -
Lele26g0522 1503 PANTHER MYB PROTEIN-RELATED 502 575 - -
Lele26g0522 1503 SUPERFAMILY RNA-binding domain, RBD 370 452 IPR035979 GO:0003676
Lele26g0522 1503 MobiDBLite consensus disorder prediction 1174 1234 - -
Lele26g0522 1503 FunFam Transcriptional activator Myb isoform A 501 553 - -
Lele26g0522 1503 ProSiteProfiles La-type HTH domain profile. 4 154 IPR006630 -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 1429 1503 - -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 1483 1497 - -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 289 347 - -
Lele26g0522 1503 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 549 604 IPR017930 -
Lele26g0522 1503 Pfam La domain 14 51 IPR006630 -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 246 268 - -
Lele26g0522 1503 ProSiteProfiles Myb-like domain profile. 549 600 IPR001005 -
Lele26g0522 1503 Gene3D - 554 605 - -
Lele26g0522 1503 Gene3D - 501 553 - -
Lele26g0522 1503 SUPERFAMILY Homeodomain-like 551 647 IPR009057 -
Lele26g0522 1503 Pfam RNA binding motif 368 457 IPR014886 GO:0003723
Lele26g0522 1503 SUPERFAMILY "Winged helix" DNA-binding domain 7 49 IPR036390 -
Lele26g0522 1503 SUPERFAMILY RNA-binding domain, RBD 153 237 IPR035979 GO:0003676
Lele26g0522 1503 MobiDBLite consensus disorder prediction 1462 1478 - -
Lele26g0522 1503 MobiDBLite consensus disorder prediction 677 692 - -
Lele26g0522 1503 FunFam Transcriptional activator Myb isoform A 554 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0522 Lele-ChrLele26 3301438 3313126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0522 486 1503 MYB Transcription Factor Family AT4G32730 43.612 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele26g0522 RRM_3 1.2e-19 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0536 01 3207786 3209958 Lele26g0522 26 3301438 3313126 CCT
Lele02g0531 02 3194282 3201667 Lele26g0522 26 3301438 3313126 CCT
Lele03g0545 03 3239231 3241419 Lele26g0522 26 3301438 3313126 CCT
Lele04g0550 04 3334253 3336560 Lele26g0522 26 3301438 3313126 CCT
Lele26g0522 26 3301438 3313126 Lele27g1574 27 21526203 21529695 hybridization
Lele26g0522 26 3301438 3313126 Lele28g0515 28 3271550 3275088 hybridization