Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0503 ATGTTGCAGGATCTTCCCCAGAAGATGTGTGAAAACTTGTGTGGACGTTCATTTATCAATTGTTTGCTGCTTTTCTTCATGTTTTCTTCTTTCCTTCCGAAGGTTGAAGCCCGAGACCCCGGACGGATGCATGTAAGCACAGCCATGGTACTAGTGGTGCTCTCCATGATGTTTACGGTAATACTTGTACTGATTGTTTATATAAAATTCTGTCGAACCAGTTCTTTCGAGATTCTGAACCAAAGCATCCACCCCCAGAACTTGGCTCGAACAGAGCAGTCCAAGTTTTATGGGATTGACAAGCAAGTAATCAAAACACTCCCCGTGTTCAAGTTTTCTTTACTCAAAGGATCAAAAGAAGGCCTAGTATGCGTTGTTTGCCTGTCGAGATTTGAAAACAGCCAAACTCTTAGGTTGCTCCCAAAGTGCAAGCACTCTTTCCACATTAATTGCATAGACATGTGGCTTGAAGGTCACTCTACATGCCCTCTCTGTAGGTGCAGGGTAGACCCAGGGGATATCAAGAGCTTCACTTCTTCAATCAGCTCAAGGTTCCTGAGAGTCCCTTCCAATTTAACAGAGGAACCAGATCTTGAAATCTTTGTGCAGAGGGGGCAATCCCATCAAGGGTCATCGAGAATCAACTCTGAGAGATGCTTATGGAATGTGGAAGAGGAGGGCAAGAAGGAAGAAGAACCGCTCATTGATAATGGTGGAAATCGGGAAATTCTGCACAAGTTCAATCACAGAATAGTTATCTCTGGTTTTGTTACGAGGAGTAGGTGGAGTGATCTTACTGCGACGGATTTGCTATTCTTAAACTCGGAAATGCTCAGTGTTATGTCGAGCACAAGATTCCTTGCTTCAGAATCCGCCAACAGGGAATCGTCACGAAGCATTTCAAACCTTTCATCTGCATCCAACGAGGAAGAAAACTCGTACAAGCCACTGAATTGGGGTGGTAAGAGATCAAAGTCTGAGATTACAATTGTTCCAAGGTTGAAGGAAATCAACAGAATGAAGAACTTAGCAGCATGTGGCGACAACAATGGGAGTGAGGAGAGATCACGGAGGATATGGTGGCCAATCGCGAGGCGAACCGTGCTAGGATTTTCCAGACAAGAAAGAAGTTCAACGGAGTTAGAATCAAAAGAATTAGGTTCAAATGTGTAA 1173 0.4399 MLQDLPQKMCENLCGRSFINCLLLFFMFSSFLPKVEARDPGRMHVSTAMVLVVLSMMFTVILVLIVYIKFCRTSSFEILNQSIHPQNLARTEQSKFYGIDKQVIKTLPVFKFSLLKGSKEGLVCVVCLSRFENSQTLRLLPKCKHSFHINCIDMWLEGHSTCPLCRCRVDPGDIKSFTSSISSRFLRVPSNLTEEPDLEIFVQRGQSHQGSSRINSERCLWNVEEEGKKEEEPLIDNGGNREILHKFNHRIVISGFVTRSRWSDLTATDLLFLNSEMLSVMSSTRFLASESANRESSRSISNLSSASNEEENSYKPLNWGGKRSKSEITIVPRLKEINRMKNLAACGDNNGSEERSRRIWWPIARRTVLGFSRQERSSTELESKELGSNV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0503 390 CDD RING-H2_PA-TM-RING 123 166 - -
Lele26g0503 390 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Lele26g0503 390 SMART ring_2 124 165 IPR001841 -
Lele26g0503 390 MobiDBLite consensus disorder prediction 297 314 - -
Lele26g0503 390 Pfam Ring finger domain 124 166 IPR001841 -
Lele26g0503 390 SUPERFAMILY RING/U-box 104 171 - -
Lele26g0503 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 172 IPR013083 -
Lele26g0503 390 MobiDBLite consensus disorder prediction 297 318 - -
Lele26g0503 390 FunFam E3 ubiquitin-protein ligase ATL6 87 172 - -
Lele26g0503 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 42 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0503 Lele-ChrLele26 3198897 3200069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0503 46 378 C3H Transcription Factor Family AT2G20030 39.773 1.96e-68 219