LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g0489	ATGCCTGAACTGCGTAGCAGAGCGCGCAGGAATCGGGCATTACATAACCCAATCCCCAATCCGATTACCCAACCCCATAAGCCCACGGTAAGAACACGCCAGAGGAGGAGAACCAACGTGCAGAACAAGGAGAATCCGCAGCAGAAGAACACGATCGGGGTTGATGAAACTAATTGTATTGTAAGTGAGGACGTTGGCTCCATTCCTGAAACGAGGACGTTGGGAGATAAGGAAGGAAAAGAACAAGGACAAGCGCCAGACGCAAAGCTTAGGGTTTTGAGAGAGAAAGTTGGGGATAAAGGCATGGATGAATCCGACAGTGGTGGTCATAGTCCCGATAAGGCTCCGGCTGCCGAAGACGAGGGCTGCACCGCTCCGTTACCTGAGAAGGTCCAGGTTGGGGGTTCGCCAGTATATAGAATTGATAGAAAACTGGGAAAAGGAGGATTTGGACAAGTCTTTGTTGGCAGGCGTGTTGGTGCAAGAAATTCCATTGAACTGACCGGTCCTGGAGCTGTAGAGGTGGCCTTAAAGTTTGAGCATAGAAGCAGTAAAGGCTGCAACTATGGACCACCATATGAGTGGCAGGTTTACAATGTGTTGGGTGGTAGTCACGGTGTTCCACGAGTTCATTATAAGGGGAGGCAAGGTGATTATTATATTATGGTAATGGATATGCTTGGCCCTAGTCTATGGGATGTATGGAATAACAACTCTCATGCGATGTCTATAGCAATGGTAGCTTGTATTGCCATTGAGGCAATATCCATATTAGAGAAGATGCATTCTAGAGGCTATGTGCATGGCGATGTAAAACCTGAGAACTTCTTGCTTGGCCCCCCTGGAACTCCCGATGAGAAGAAGCTGTTTCTTGTCGATCTGGGATTAGCTACCAGATGGCGCGATAATTCATCAGGCCTTCATGTTGAGTATGATCAACGCCCTGATGTATTTAGGGGGACAGTACGATATGCTAGTGTGCATGCTCATCTTGGTAGAACTGGCAGCAGAAGAGATGACTTGGAATCTCTTGCTTATACACTGATCTTCCTTCTTCGTGGTCGGCTTCCGTGGCAAGGATATCAGGGAGAAAACAAAGGATTCCTTGTCTGTAAGAAGAAGATGGCCACATCCCCAGAAACTTTGTGCTGCTTTTGTCCTCAACCCTTTCGACAGTTTGTTGAGTATGTTGTGAATCTGAAGTTCGATGAAGAACCAAATTATGCAAAGTATATCTCCCTTTTTGATGGAAACGTTGGTCCGAATCCAGATATCAGGCCAATAAATACTGAGGGGGCTCAGAAAGTTGGTCATAAGAGAGGACGATTGACCATAGTAGATGATGACGAACAACAGCCCAAGAAGAAGGTCAGAATGGGAATGCCAGCAACTCAATGGATCAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTATAATGTGGCGGATATGCGCCTGTCCCAACACATTGAGAAAGGAAATGAGGATGGGTTATTTATAAGCAGTGTGGCTTCTTGTTCCAATCTTTGGGCACTAATCATGGATGCTGGCACTGGTTTCTCTTCACAAGTTTATGAACTCTCACCCTATTTTCTTCATAAGGAATGGATTATGGAACAATGGGAAAAAAATTATTACATCAGTGCTATAGCTGGCGCTAATAATGGAAGCTCATTGGTTGTAATGTCTAAAGGGACCCAGTACCTGCAGCAGTCCTATAAAGTCAGCGATTCATTCCCATTCAAGTGGATTAATAAAAAATGGAGGGAGGGCTTTTATGTCACTGCCATGGCAACTGCTGGAAGTAGATGGGCAATTGTCATGTCCCGTGGTGCAGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTGTATCCCAGTGAAGGTATTCACCAGAGGTGGGATAATGGTTACCGCATCACATCTACTGCTGCGACATGGGACCAAGCTGCTTTCATTCTTAGCGTCCCGAGAAGAAAACCAGCTGATGAAACTCAAGAGACGCTTCGTACATCTGCATTCCCTAGTACTCATGTCAAGGAAAAATGGGCCAAGAACTTGTATATAGCATATATTGGTTATGGGAGAACAGTTTCATGA	2109	0.4547	MPELRSRARRNRALHNPIPNPITQPHKPTVRTRQRRRTNVQNKENPQQKNTIGVDETNCIVSEDVGSIPETRTLGDKEGKEQGQAPDAKLRVLREKVGDKGMDESDSGGHSPDKAPAAEDEGCTAPLPEKVQVGGSPVYRIDRKLGKGGFGQVFVGRRVGARNSIELTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHAMSIAMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSSGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGNVGPNPDIRPINTEGAQKVGHKRGRLTIVDDDEQQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFSSQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHQRWDNGYRITSTAATWDQAAFILSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIAYIGYGRTVS	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g0489	702	MobiDBLite	consensus disorder prediction	70	117	-	-
	Lele26g0489	702	MobiDBLite	consensus disorder prediction	1	131	-	-
	Lele26g0489	702	SUPERFAMILY	Protein kinase-like (PK-like)	139	416	IPR011009	-
	Lele26g0489	702	SMART	serkin_6	139	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele26g0489	702	ProSitePatterns	Protein kinases ATP-binding region signature.	145	178	IPR017441	GO:0005524
	Lele26g0489	702	ProSiteProfiles	Protein kinase domain profile.	139	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele26g0489	702	FunFam	casein kinase 1-like protein HD16	112	458	-	-
	Lele26g0489	702	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468
	Lele26g0489	702	Gene3D	Transferase(Phosphotransferase) domain 1	110	460	-	-
	Lele26g0489	702	CDD	STKc_CK1	139	415	-	-
	Lele26g0489	702	PANTHER	CASEIN KINASE-RELATED	139	670	-	-
	Lele26g0489	702	MobiDBLite	consensus disorder prediction	43	57	-	-
	Lele26g0489	702	Pfam	Protein kinase domain	139	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g0489	Lele-ChrLele26	3118685	3122741	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g0489	258	415	MAP Kinase Kinase Kinase	AT5G50180	26.250	4.67e-08	53.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Lele26g0489		Pkinase	1e-14	CL0016