Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0455 ATGGGAACTGGATGGAGAAGAGCCTTTTGCACTCGTGACCCTGAATCTACCATATCCGATAAGCAGCACCGAGGCACGAGTCCAAGCCCCAGCCCCAGAAGCTGTGTTCGATTGGGTTTTCTCTCCGGCGGAAGCAACCCTTCTACTCCTCGGTTGCAGCAGCAATCTCAAGCCGTGTCTAGTCCGAGCTTGCGTTGCCGAACAGTTTCAGAAGCAGCGAACGTGAATGAGAGCCCAAGGTTTCAAAGCAAAAATACTCCCAGGGCAACCAAGTCCCCCAAAACCAGTTCAACCTCAAATCCCACATCTCCGCGTTCTCCTTTGAAGTTATCTCTCTTCAGGAACAGCTTCAAATTCAGGAGTAGTTGTGGAATCTGTTTGAATAGCGTGAGAACCGGACAGGGAACGGCCATTTACACTGCAGAATGTACTCACGCCTTTCACTTTCCCTGCATCGCCGATTATGTAAGCAAACATGGAAGTCTCGTCTGCCCCGTCTGCAACGCTACCTGGAAAGACGTGCCTCTGCTAGCCGCACACAAGAACCACGCCAAGGAATCCGCCGAAAAGAACGACATCGTTGTTGAGAAGAACGTCGTAAAACCAAATGCCACCCAGAAGACTAAAGAAAACTCGTCCCCAGTTTTCAGAACCAAGCTTGTTGAACGGCCGCCCCAACAATTGCCACAAAAGCAGCCAAGGCAATCTAATTCATTCAGGTCCTACGACGACGATGAGCCACTTCTATCTCCCACATCCGGTGGCCGAATCATTCCAATACCTGAAGCCGACGAAAACGCCGAAGAAGACGAAGACGACGTTGAAGAATTCCAGGGATTTTTCGCCAATGCAAAATCTTCATCCTCAATCAAATCTTACTCTGATGACCTGCAAATAAGCGAAAAAGATTCCAGGACCGTTCAGGTGAAGTTGATCCCCGAGTGTGCCGTAGTGTCAGTCTCTCGAACCCACGAGACTTACGCTTTGGTTCTGAAAGTGAAGGCTCCTCCTCCGCCACCTCCAGCGCGTTGTAGCAATAACAGTTCAACGCCGCATCTTGGTCAGTCGCAGCGAGCTCCCCTAGATCTCGTAACGGTTCTTGACGTTGGTGGAAGCATGACAGGTGCGAAGCTTCACATGCTTAAGCGCGCGATGCGTTTGGTTATTTCCTCACTCAGCCCAGCTGACAGGCTCTCCATAGTGGCTTTCTCCGCCACTTCCAAGCGGCTCTTACCCTTGAGAAGAATGACGGCTCAAGGACAGCGCGTGGCTCGGCGCATCATCGATCGGCTTGTCTCTGGCCACGGCGCTTGTGTGGGAGATGCTCTAAGAAAAGCCACCAAAGTGCTCGAGGACCGTAGGGAGAGAAACCCGGTTGCCAGCGTCATGCTCCTATCGGACGGTCAGGATGAACGAGTCCAAAGCAGTAACATCAACAACCAACGAAAATCCTCGGACCACGTGTCCTCCACCCGATTCGCCCACGTCGAGATTCCGGTTCATGCGTTCGGGTTCGGGAAAAAGAGCGGCTTCAGCCACGAGCCGGCCGAGGATGCATTTGCCAAGTGCGTTGGCTGGTTATTGAGTGTGGTTGTGCAAGACTTGAGAATTCAGCTCGGCTTCCAGTCGGGCTCATCGGCTGCTGAAATCAGCGGCATCTATTTGTGCGGCGGTCGAACCACAGCACTGAGCTCAGGCTGCGTACGGCTCGGCGACTTGTACGCCGAGGAAGAGAGGGAGTTACTGGTGGAGCTGAGAGTTCCAACGTCGGCTTTGAGGACCCACCACGTGATGACGGTACGGTGCCTGTATAAGGATCCTGCTTCTCAAGAGATCGTATCCAGTAGGGAACAGGCCCTACTGGTGCCGCCACCTCAGGGCACGCGAAGCGAACGCTTGAGGAATTTCTTCATTGCGACTCGAGCCATAGCTGAGTCCCGCTGGCTCGTTCACCACAACGACTTCACGAGCGCTCATCATTTACTGGCTTCGGCTCGCGCGCTTTTGATGCAGGCCAAGTCGAGCTCGGCCGAGGAGCAGGTGCGTGCGTTGGAAGCTGAGTTGGCAGAACTTCATTGGCGCACTCAGAACTCGATGGAGCAGCAGACGACGATGCAGGAACGCAGGAGGGGCTACGAGAGGGCGATGACGAGCTTGGTGGATGATAACGGTGAGCCGCTCACGCCGACGTCGGCTTGGAGAGCTGCTGAGAAGCTGGCTAAGGTGGCCATCATGAAGAAGTCATTGAACAGGGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2292 0.5384 MGTGWRRAFCTRDPESTISDKQHRGTSPSPSPRSCVRLGFLSGGSNPSTPRLQQQSQAVSSPSLRCRTVSEAANVNESPRFQSKNTPRATKSPKTSSTSNPTSPRSPLKLSLFRNSFKFRSSCGICLNSVRTGQGTAIYTAECTHAFHFPCIADYVSKHGSLVCPVCNATWKDVPLLAAHKNHAKESAEKNDIVVEKNVVKPNATQKTKENSSPVFRTKLVERPPQQLPQKQPRQSNSFRSYDDDEPLLSPTSGGRIIPIPEADENAEEDEDDVEEFQGFFANAKSSSSIKSYSDDLQISEKDSRTVQVKLIPECAVVSVSRTHETYALVLKVKAPPPPPPARCSNNSSTPHLGQSQRAPLDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLSPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIIDRLVSGHGACVGDALRKATKVLEDRRERNPVASVMLLSDGQDERVQSSNINNQRKSSDHVSSTRFAHVEIPVHAFGFGKKSGFSHEPAEDAFAKCVGWLLSVVVQDLRIQLGFQSGSSAAEISGIYLCGGRTTALSSGCVRLGDLYAEEERELLVELRVPTSALRTHHVMTVRCLYKDPASQEIVSSREQALLVPPPQGTRSERLRNFFIATRAIAESRWLVHHNDFTSAHHLLASARALLMQAKSSSAEEQVRALEAELAELHWRTQNSMEQQTTMQERRRGYERAMTSLVDDNGEPLTPTSAWRAAEKLAKVAIMKKSLNRVSDLHGFENARF 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0455 763 SMART VWA_4 360 547 IPR002035 -
Lele26g0455 763 CDD RING-H2 123 168 - -
Lele26g0455 763 Pfam von Willebrand factor type A domain 363 469 IPR002035 -
Lele26g0455 763 SUPERFAMILY RING/U-box 117 173 - -
Lele26g0455 763 MobiDBLite consensus disorder prediction 201 215 - -
Lele26g0455 763 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 122 758 - -
Lele26g0455 763 SMART ring_2 123 167 IPR001841 -
Lele26g0455 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 238 IPR013083 -
Lele26g0455 763 FunFam Probable E3 ubiquitin-protein ligase EDA40 362 527 - -
Lele26g0455 763 MobiDBLite consensus disorder prediction 334 357 - -
Lele26g0455 763 Coils Coil 667 694 - -
Lele26g0455 763 ProSiteProfiles VWFA domain profile. 362 506 IPR002035 -
Lele26g0455 763 MobiDBLite consensus disorder prediction 200 259 - -
Lele26g0455 763 MobiDBLite consensus disorder prediction 1 108 - -
Lele26g0455 763 Pfam RING-like zinc finger 123 152 IPR001841 -
Lele26g0455 763 Gene3D von Willebrand factor, type A domain 362 523 IPR036465 -
Lele26g0455 763 CDD vWA_C3HC4_type 361 532 - -
Lele26g0455 763 SUPERFAMILY vWA-like 360 508 IPR036465 -
Lele26g0455 763 MobiDBLite consensus disorder prediction 41 108 - -
Lele26g0455 763 ProSiteProfiles Zinc finger RING-type profile. 123 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0455 Lele-ChrLele26 2878623 2881024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0455 123 173 C3H Transcription Factor Family AT1G74410 39.216 6.54e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0455 26 2878623 2881024 Lele27g1642 27 21936214 21938617 hybridization
Lele26g0455 26 2878623 2881024 Lele28g0448 28 2854796 2858114 hybridization