Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0444 ATGGGGAGAGGGAAGATCGTGATTAGGAGAATCGACAATTCGACGAGCAGGCAGGTAACGTTCTCCAAAAGAAGAAACGGTTTGCTGAAAAAGGCGAAGGAGCTCGCAATCCTGTGCGACGCTGAGGTAGGAGTTATGATCTTCTCCAGCACCGGCAAGCTCTACGACTTCGCCAGCACAAGCATAAAATCAGTAATCGAACGGTACGGCAAAACTAAAGAGGAACATCATCATCTAGGAAGTTCAACTTCTGAAGTCAAGTTTTGGCAAGGGGAGGCAGCAATGTTGAGGCAACAACTGCAGAACTTGCAAGAGAGTCACCGGCAAATAATGGGAGAAGAACTTTCAGGTTTGACTGTCAAAGAATTACAGAGTTTAGAGAGCCAGTTGGAAATTAACCTTCGAGGTGTCCGTTTAAAAAAGGATCAACTTTTAATGGATGAAATACAGGAAATAAACCAAAAGGGAAACCTCTTACGCCAGGAAAATGCGGAACTGCGCAAGAAGTTAAACCTAATTCATCAAGAAAACAAGGAATTAAAAAAGAAGGTCTATGGAACAAGAGATGGAAATGGAACAAACAGAAATTCTGTTCTCACAGATGGCCTAGGCATAGGAGAGAATTTGCATGTGCCAGTGAATCTCCAGCTTAGCCAACCTCATCAGCAAAACCATGAGTCACCTTCAGGAGACACAGAGTTGGGCAGATTGCAACTGCACTGA 723 0.4398 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTSIKSVIERYGKTKEEHHHLGSSTSEVKFWQGEAAMLRQQLQNLQESHRQIMGEELSGLTVKELQSLESQLEINLRGVRLKKDQLLMDEIQEINQKGNLLRQENAELRKKLNLIHQENKELKKKVYGTRDGNGTNRNSVLTDGLGIGENLHVPVNLQLSQPHQQNHESPSGDTELGRLQLH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0444 240 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Lele26g0444 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele26g0444 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele26g0444 240 Coils Coil 149 183 - -
Lele26g0444 240 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele26g0444 240 Coils Coil 86 113 - -
Lele26g0444 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele26g0444 240 MobiDBLite consensus disorder prediction 219 240 - -
Lele26g0444 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele26g0444 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele26g0444 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele26g0444 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele26g0444 240 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lele26g0444 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele26g0444 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele26g0444 240 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Lele26g0444 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0444 Lele-ChrLele26 2790902 2800357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0444 1 230 MADS-box Gene Family AT2G22630 58.696 4.08e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele26g0444 K-box 3.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0444 26 2790902 2800357 Lele28g0437 28 2774150 2784314 hybridization