LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g0423	ATGCTTCCTTTCAGGAGTTTCTATGGTTTTGAGAGATGGTTAGATCGGAGCGCGCATTCCAAGGAACCCAGCTCGTCCTTCAAGTCAGTGGGATTGGATAACGGCAAACCAATTCTCAACTCCACATCTAAGTCTGAGAGGAAATCAATGGAAGCATGCAAGAGCCATAGAGAAGCTGAGAGGAGACGCAGGCAGCGAATCAACGCCCACCTCTGCACTCTACGTTCTCTCCTCCCTAACGCCGTAAAGTCGGATAAGGCCTCGTTGCTAGCGGAGGTGGTCCGACGCGTCAAAGACCTGAGGAAACAGGCCGATGACGTGGCGGGCCTTCACGACGGAGACTTGTTGGGAATCACTATAAGCGGAGAATCTGCGTCGGACCCCGGAGACTCGGAGCAGGGGGCGTTCCCGGGAGAGTCGGACGAGGCGACTGTGAGTTACTGCGAGGGAGGTGGTGAGAGGAAACTCATGAAAGCCACGCTCTGCTGCCAGGACCGGCCCAACCTGAACCGAGATCTAGAGGAGGCGATCCGGTCGGTTCGGGCTAAGGCGGTACGAGCCGAGATGATGACCATTGGTGGGCGGACCAAGAGTGTGGTAATTGTCCAATGGACTGGTGGAGAAGACGAAGAAGAAACAGAGGAGGCTGGGGAACTGGAACGGGCTTTGACGGCCGTCGTAGAGAATCGGGCCCTCATGTGGCCTAGACTGGGCCGAATGACGTTGGGCCACAAACGGGCCATACATTGTTACGGCTCACCTGATGATGGCGGCGGCTTCTTGTTTGGGACCGCTAACATACAGGAAAAGATGTCGTGGCTAATCCGTGACCGCTCCAAAAATGGTTCACTCGTCCGATCAACGTTTGGTCTTGTGCGTTCGTTTGTCCATGGCAACTCCTCTTTGTGCTTACCCTTCTCTCCTCCAAACAGCTTCGCTCTGGGTTTCTCAAGAACAATGCCTCGCCCTAACTTCGCGAGATGGGCAAGGAGTGTAGCAGCATTCTCGCCTTCGATGAAGGAGAAACAACCAGAGGCTCCAAATTATGTTGGACTCAGTCAAGAGTACAAAGGCCCAAACCTTGTAACCAGGGTTGAAACTGACGATAGACAACAGGACTTATTTGGCTTGATGAAACAGAGGTTTCTGAGTTTCAAGAAGCAGAAATACATGAAAGAGTTGGAGTATTTTCATGCTCTTGTTGAAGCTCAGTCCCCAAAGTTCATGGTAATAGCTTGTGCAGACTCTAGGGTATGCCCCTCTAACATTTTAGGATTTCAACCGGGAGATGCCTTCATGATACGTAACATCGCCAATCTTGTTCCTCCCATGAAGAATGGAGCAACTGAGTGTAATGCTGCTCTTGAGTTTGCTGTAACCATTCTCAGGGTTGAGAATATTTTAGTTATTGGCCATAGCAATTGTGCTGGAATTGAAACGTTGATGAATATACAAGAAGATGTCGAATCGAGGAGCTTCATTAACAATTGGGTTGTTAATGGGAAAGTTGCCAAGTCGAGGACAAAAGCTGCCACAGCTCATCTTAGCTTTGGCCCTCAATGCAGATTCTGTGAGAAGGAGTCTGTAAACCAATCACTATTGAACTTGCTGAGTTACCCTTGGATAGAAGATAGAGTGAAAAAGGAGTTGCTTTGTCTTCATGGAGGATATTATGATTTCTCAAATTGCTCATTTGAGAAATGGACACTTGATTGGAGACGATGCAATGTTCAAGATCAAGAAGGAGAACACAGTTATAATGTAAGAGACCAAGAATTTTGGTGTTGA	1788	0.4894	MLPFRSFYGFERWLDRSAHSKEPSSSFKSVGLDNGKPILNSTSKSERKSMEACKSHREAERRRRQRINAHLCTLRSLLPNAVKSDKASLLAEVVRRVKDLRKQADDVAGLHDGDLLGITISGESASDPGDSEQGAFPGESDEATVSYCEGGGERKLMKATLCCQDRPNLNRDLEEAIRSVRAKAVRAEMMTIGGRTKSVVIVQWTGGEDEEETEEAGELERALTAVVENRALMWPRLGRMTLGHKRAIHCYGSPDDGGGFLFGTANIQEKMSWLIRDRSKNGSLVRSTFGLVRSFVHGNSSLCLPFSPPNSFALGFSRTMPRPNFARWARSVAAFSPSMKEKQPEAPNYVGLSQEYKGPNLVTRVETDDRQQDLFGLMKQRFLSFKKQKYMKELEYFHALVEAQSPKFMVIACADSRVCPSNILGFQPGDAFMIRNIANLVPPMKNGATECNAALEFAVTILRVENILVIGHSNCAGIETLMNIQEDVESRSFINNWVVNGKVAKSRTKAATAHLSFGPQCRFCEKESVNQSLLNLLSYPWIEDRVKKELLCLHGGYYDFSNCSFEKWTLDWRRCNVQDQEGEHSYNVRDQEFWC	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g0423	595	MobiDBLite	consensus disorder prediction	23	46	-	-
	Lele26g0423	595	MobiDBLite	consensus disorder prediction	21	60	-	-
	Lele26g0423	595	SUPERFAMILY	beta-carbonic anhydrase, cab	372	574	IPR036874	GO:0004089\|GO:0008270
	Lele26g0423	595	Pfam	Carbonic anhydrase	409	562	IPR001765	GO:0004089\|GO:0008270
	Lele26g0423	595	SMART	Pro_CA_2	401	569	IPR001765	GO:0004089\|GO:0008270
	Lele26g0423	595	Gene3D	Carbonic anhydrase	366	576	IPR036874	GO:0004089\|GO:0008270
	Lele26g0423	595	FunFam	Carbonic anhydrase	370	577	-	-
	Lele26g0423	595	Pfam	Helix-loop-helix DNA-binding domain	53	100	IPR011598	GO:0046983
	Lele26g0423	595	Coils	Coil	170	190	-	-
	Lele26g0423	595	MobiDBLite	consensus disorder prediction	120	144	-	-
	Lele26g0423	595	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 1.	413	420	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Lele26g0423	595	CDD	beta_CA_cladeB	381	568	IPR045066	GO:0004089\|GO:0008270
	Lele26g0423	595	PANTHER	CARBONIC ANHYDRASE	352	572	IPR001765	GO:0004089\|GO:0008270
	Lele26g0423	595	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	55	107	IPR036638	GO:0046983
	Lele26g0423	595	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	51	100	IPR011598	GO:0046983
	Lele26g0423	595	SMART	finulus	57	106	IPR011598	GO:0046983
	Lele26g0423	595	Gene3D	-	45	108	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g0423	Lele-ChrLele26	2589007	2592574	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g0423	48	228	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G68810	42.473	7.26e-29	116

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Lele26g0423		Pro_CA	2.3e-38	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele26g0423	26	2589007	2592574	Lele27g1676	27	22213715	22215208	hybridization
	Lele26g0423	26	2589007	2592574	Lele28g0420	28	2595578	2597703	hybridization