Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0403 ATGGAATTTGAGGAGCACGACGAGCCGGACGACGACATCCAGATCCCGTCGTCGCCTCCTGCTTACGACTCCCTCCCCAACAACTCTCTCCCCAGGTCCAAAATAACCGTCTCCGGAGGAGGAGCAGGAGGAGAGGGTGGCGCCTCCGCCGTCACGCCTAGCCGTAAAGCTGACCCCGCGATGACGGCCAGGTACCGAGAATGCCAGAAGAACCACGCCGTCAGCCTAGGTGCACACGCGGTCGACGGATGCGGAGAGTTCATCGCGGCGGGAGAGGAAGGCACACTCGACGCGCTAAAATGCGCCGCCTGCAACTGTCACCGCAATTTCCACCGTAAGGAGACGGACGGCGGGGACATGACCCCGTACCAGCAGCCGCCACCGCCGCCTCACTACCAGTACCACCACCAATATCCACCGTACTACCGTGCGCCTCCGCCTCCAGCTGGGTACCTCCACCACCATCTGACGGTTCAGCCGATGGCGCTGCAGCGGTCTCTGGCCCTGCCGGCTCCGGCGCCGATTAGAGATGAAGAGGACATGTCAAATCCGAGCAGCAGCGGAGGCGGGGGAGAGAAGAAGAGGCATAGGACGAAGTTCACGCAGGGGCAGAAGGATAAGATGCTGGCGTTCGCGGAGCGTGTCGGGTGGAGAATCCAGAAGCACGATGAAGCTGCGGTGGAGCAATTCTGTGCGGAGACCTGTGTCAAGAGACATGTACTTAAGGTTTGGATGCACAATAACAAGAGCACTCTTGGTCAAGATGGTTGCTTCGGGCATTTTTGTTACCACGATCCTCTCTATTCTAATTCCAACAGCTGGAGTTTAGTACCATTGAGAGTGAGACCGTTTTATGCTCCTTCCGGCACAATTCTCGCTTGTTCAAATGTACTGGTTGTTGAAGACGAGATACCTCGTCCTCCATCGATTGTTCAAAAGACGTTCAGTTATTGA 954 0.5713 MEFEEHDEPDDDIQIPSSPPAYDSLPNNSLPRSKITVSGGGAGGEGGASAVTPSRKADPAMTARYRECQKNHAVSLGAHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKETDGGDMTPYQQPPPPPHYQYHHQYPPYYRAPPPPAGYLHHHLTVQPMALQRSLALPAPAPIRDEEDMSNPSSSGGGGEKKRHRTKFTQGQKDKMLAFAERVGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKSTLGQDGCFGHFCYHDPLYSNSNSWSLVPLRVRPFYAPSGTILACSNVLVVEDEIPRPPSIVQKTFSY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0403 317 MobiDBLite consensus disorder prediction 20 35 - -
Lele26g0403 317 Pfam ZF-HD protein dimerisation region 63 115 IPR006456 -
Lele26g0403 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 251 - -
Lele26g0403 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Lele26g0403 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 114 IPR006456 -
Lele26g0403 317 MobiDBLite consensus disorder prediction 174 202 - -
Lele26g0403 317 Gene3D - 178 254 - -
Lele26g0403 317 FunFam Zinc-finger homeodomain protein 2 180 254 - -
Lele26g0403 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 193 249 IPR006455 -
Lele26g0403 317 SUPERFAMILY Homeodomain-like 183 252 IPR009057 -
Lele26g0403 317 MobiDBLite consensus disorder prediction 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0403 Lele-ChrLele26 2442365 2443882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0403 64 252 ZF-HD Transcription Factor Family AT4G24660 59.794 1.93e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele26g0403 ZF-HD_dimer 8.2e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0403 26 2442365 2443882 Lele27g1693 27 22331771 22333176 hybridization
Lele26g0403 26 2442365 2443882 Lele28g0400 28 2450074 2450817 hybridization