Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0398 ATGCATTCTTGGTGTTATTTGATTTGGTTTGCCACTCTCCTTCTGCTTCTGGAACAGATCGACCCGATCTCTAAAATTTTAAGGACATGGGATAATTCGAAGAGTCGACCTTGCGAGCTTATTTTGCGCAAAATAGGACAGCTTCCTGATATGACTGCTGATCATCCAAGAACAGATGTTATGAGGAAGAAAAGGAAAGGAAGCGAGACAGATGCATCCTCAAATCTTCAAGAAATTTTGACTTCACATCATGGGAACCATGGATCTCTGTCATCAAATTTGAAGTCTCATTACTCGCTTGAAGATTGTTCCAGGTTGAAGAAGAGGTGTAAAGAAGATGCTGATGCAGAACCGGTTGCTTCCTGTAATAAAAGGCTTGCAGGCTTTGCCACCTTCGCTCCACCTTGTGGGACATCATCTTTGATCACACCTGGAAGAGGTCTTAAGAGGAAGATAGGATGCATTGATGTTGCTACCCAAATGGGCAGGAAGAAGAGGATAGAGGATGATTATGTTTTTGGTGAAACAATTGGGCAAGGAAAATTTGGATCTGTATCTTTGTGTTGGTCCAGGCTTAGTGGAGCAGAATATGCATGTAAGACCCTGAGGAAGGGGGAGGAGACAGTTCATCGAGAAGTGGAGATAATGCAACACTTATCTGGACATCCAGGGGTTGTGACGCTGCAGGCAGTGTATGAAGAAGCTGACTGCTTCCATCTTGTAATGGAGTTGTGTTCTGGAGGGCGATTGATTGATAGGATGGTTAAGGAGGGCCCTTGTACAGAGCAAAGGGCTGCTAATGTACTCAAGGAAGTGATGTTAGTCATAAAGTATTGTCATGATATGGGAGTTGTGCATAGAGATATCAAACCTGAAAATATCCTGCTAGCAGCATCAGGAAAAATAAAGATTGCCGATTTTGGGCTTGCCATGAGAATATCTAATGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCATATGTTGCTCCGGAGGTATTGCTGGGTAGCTATTCTGAGAAGGTGGATGTATGGAGTGCTGGAGTTCTCCTGCATACTCTGTTAGTTGGCTTTCTTCCATTTCATGGAGATTCGTTGGAAGCAGTTTTTGAGGCTATTAAGAATGTCAAACTGGATTACCAAAACGGTATGTGGGATTTGATATCTAAGCCAGCCCGAGATCTTGTTGGGAGGATGCTGACAAGGGATGTTCCAGCAAGGATAACAGCTGATGAAGTACTTAGGCATCCATGGATTCTATTCTACACAGAACCAACTTTAGAAAAACTGCCCATCAGAACAAGGCTGAAGCATCAAATAGGAACCACTTGCCGCCTGTTTGTAGCGCCTGGACATAGGTCAGGAGGAAACAAGATAGACGATGGTGAAATTTCAAGCCCACTTTCATCCTCGGAGAGTAGCGATTCAGATGATGAGGACGATGGGGTGTTGATTGACGTGCTGGCATCTGCAATTTCACATGTGCGGATATCCGAACCCAAGAGGAGCAGGTTGTGTGGACCAACAGGTCCAATAGATCAGCAAGGATCATCTAACATGAAGTCTAACAACCTCTGTAAAGCATTTTGA 1590 0.4421 MHSWCYLIWFATLLLLLEQIDPISKILRTWDNSKSRPCELILRKIGQLPDMTADHPRTDVMRKKRKGSETDASSNLQEILTSHHGNHGSLSSNLKSHYSLEDCSRLKKRCKEDADAEPVASCNKRLAGFATFAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKRIEDDYVFGETIGQGKFGSVSLCWSRLSGAEYACKTLRKGEETVHREVEIMQHLSGHPGVVTLQAVYEEADCFHLVMELCSGGRLIDRMVKEGPCTEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLAASGKIKIADFGLAMRISNGQNLTGLAGSPAYVAPEVLLGSYSEKVDVWSAGVLLHTLLVGFLPFHGDSLEAVFEAIKNVKLDYQNGMWDLISKPARDLVGRMLTRDVPARITADEVLRHPWILFYTEPTLEKLPIRTRLKHQIGTTCRLFVAPGHRSGGNKIDDGEISSPLSSSESSDSDDEDDGVLIDVLASAISHVRISEPKRSRLCGPTGPIDQQGSSNMKSNNLCKAF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0398 529 MobiDBLite consensus disorder prediction 510 529 - -
Lele26g0398 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 157 439 - -
Lele26g0398 529 Gene3D Transferase(Phosphotransferase) domain 1 162 445 - -
Lele26g0398 529 MobiDBLite consensus disorder prediction 52 74 - -
Lele26g0398 529 MobiDBLite consensus disorder prediction 454 480 - -
Lele26g0398 529 CDD STKc_CAMK 170 418 - -
Lele26g0398 529 FunFam Serine/threonine-protein kinase PEPKR2 162 484 - -
Lele26g0398 529 ProSiteProfiles Protein kinase domain profile. 171 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g0398 529 Pfam Protein kinase domain 171 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g0398 529 MobiDBLite consensus disorder prediction 55 71 - -
Lele26g0398 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Lele26g0398 529 SUPERFAMILY Protein kinase-like (PK-like) 168 441 IPR011009 -
Lele26g0398 529 ProSitePatterns Protein kinases ATP-binding region signature. 177 200 IPR017441 GO:0005524
Lele26g0398 529 SMART serkin_6 171 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g0398 529 MobiDBLite consensus disorder prediction 502 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0398 Lele-ChrLele26 2401631 2404652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0398 155 418 EF-hand Containing Proteins AT2G38910 43.273 3.61e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele26g0398 Pkinase 3.6e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0398 26 2401631 2404652 Lele27g1701 27 22381896 22388267 hybridization
Lele26g0398 26 2401631 2404652 Lele28g0392 28 2409643 2412083 hybridization