Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0390 ATGGCGAGAATACACAGGAAACTCTTCCCAGCACCTTCCAATATAAACCAAACACAAGATTGTCCTGAATTTTGCGACCCAGCTTGCCCTTACAGCTGCTATTCTTTCCCAGACTACTACTTCCCGCCACCGCCGCCGCCTCCGCCACCTTTGTCGTCCACCGATCATTCCGGTTCAGGCACTCATATCTCCTCCTATTTCATCATTCTCGCTTCTTTGTTCTCGGTCATTTTCCTTCTCCTGGGCTTGTACGTGATCAAAACCAAGTGTTACGCTAGTTGGTGTGGCTGGAGACACAATGGATCCCAATCAGAGGCCTCAGACCAAGAGTTTCTTGATGAGAACCAAGTTGATCACCCTGTCTGGTTTATCACCACCTCTGGTCTGCAACAATCGATTATAAATTCTATCACAGTTTGTAAGTATAAAAGGGGTGATGGGTTGATCGAAGGAACCGAGTGTCCAGTGTGTTTGAACGAATTTCGCGAAGATGAAACCTTAAGACTCTTGCCCAAATGCAGCCATGCCTTTCACATACCCTGTATTGACACTTGGCTGCGTTCTCATACCAATTGTCCTCTCTGTCGTGCAGGGATCGTCTCTAACAATGTTAGAGCTGAGGCTGCCGTGTCGAATTTGGCTTCAACGGAGCTAAACTCTGACAATTTACGTAGGAACCAAGAGATTGAAACTGAGAATTCACCAAATGATGGCGAAGTAAACAACAATATGATGGTGATTGCAAATGGGGCATCTGGAACAGTGGAAACCCAAGACTTGAACGGTAATTTGGTTTCAAAGGAGCAAGCGAATGTTATGGGCAATGGTCCAAAATTGGATCATGGGGTTTTGAATGAAGGAAAGCGAATAAAGATAAGGTCTATGTCTATGGATTCTAGACTGGCAAATTCTTCTACTTCTGAGCCAGAAGAAAGCCATCCAGTGTTTAAAGAAATTCGGCGTTCCTCTGTTTCAAAATGTCTGCACCTGAGCCCTGTTCCGATGAAGAGGTCGTTCTCTTGTAGTGGAAGGATTCTATCAGCCAGAGATCACAGGAATATACACATAAGTCTTCCTTATTAG 1083 0.4497 MARIHRKLFPAPSNINQTQDCPEFCDPACPYSCYSFPDYYFPPPPPPPPPLSSTDHSGSGTHISSYFIILASLFSVIFLLLGLYVIKTKCYASWCGWRHNGSQSEASDQEFLDENQVDHPVWFITTSGLQQSIINSITVCKYKRGDGLIEGTECPVCLNEFREDETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVRAEAAVSNLASTELNSDNLRRNQEIETENSPNDGEVNNNMMVIANGASGTVETQDLNGNLVSKEQANVMGNGPKLDHGVLNEGKRIKIRSMSMDSRLANSSTSEPEESHPVFKEIRRSSVSKCLHLSPVPMKRSFSCSGRILSARDHRNIHISLPY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0390 360 FunFam RING-H2 finger protein ATL54 129 202 - -
Lele26g0390 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 205 IPR013083 -
Lele26g0390 360 CDD RING-H2_EL5_like 153 196 - -
Lele26g0390 360 Pfam Ring finger domain 153 196 IPR001841 -
Lele26g0390 360 PANTHER RING-H2 FINGER PROTEIN ATL16 49 340 IPR044600 GO:0016567|GO:0016740
Lele26g0390 360 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Lele26g0390 360 SMART ring_2 154 195 IPR001841 -
Lele26g0390 360 SUPERFAMILY RING/U-box 148 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0390 Lele-ChrLele26 2353657 2354739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0390 1 200 C3H Transcription Factor Family AT1G72220 52.466 7.13e-65 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0390 26 2353657 2354739 Lele27g1708 27 22436405 22437493 hybridization
Lele26g0390 26 2353657 2354739 Lele28g0385 28 2368290 2369384 hybridization