Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0389 ATGGATCTTCCTCAAGATATCGATCTTTATCTCAAAGAATCCATCGACGACTCCTTGGGTCTTCCGATTTCGTTGCGGACTTTAGAATCCAAACTTCGAGCCTCCGAAGAGTCGCAACGGCTACTACGCCAGCAGCGCCTTTCTCTACTCTCCAAATTAAAGGAGAAAGATCAAATGATTGACCGCGTTAAGTCTGAAGCGACTATGAATGCTCAAGCTCTGAAGAAGTTCGTTGAGGAGAATCAGAAATTGGCTTCCGAGTGTGCAAATCTGTTAAGTCAATGTCATAAATGGGAAAGAGAATGCTCGCTTTATGATCGCGACAGGGAAGCGTTGATGGAATTTGGAAACGAAGCTGATGAACGGGCAAAGGAGGCAGAGTTCCGTGCACAACAGTTGGAAGAGGAGTTCGGAAAGTTATTGCAAGAATTGCAGTACTACAAGCATGAATACAATATGCGACCGGATGGTGCATCTTCTAATAGCACAGCAGTGGAAGCGAATTTACTTGAATCCCTTTTGTCAAAGGTTACAAATAAAGATGCTGCTTCTGCGTATACGTTCTTGGAGGCAAACAGTGGAAATGAAGCGTGTAAGAATTTGTTAACAATGTGGAACTGCCTAAAGCCATCGACGCAGAAAGTTTTGTCCCTTGTCGCTGAAGTGAAATCACTTGAGAAAGATAAGGAGCATCTCAGGATTAATCTTGACAGAGCTGAGGAGGAGGTCAAATTACTGTCGGATGAAAATAACATATTGAACAAGGAGAACAAAAGGCTACTGAAGCTAAAGGACAGGAACCATCTTGGTTCGGGTGGGAAACATAGCAGCAGTGCATCTGCCAAGTCAAACAAGAGAAAGTCTAGTCCCAAGACAAGTAGCTCCATTGAGAGAAAGATTGATTTTGAGGATATAGATACAGCAAGAACACCTTTGTCACCGTTACAAACTAACTCTCCCGACTCTAGAATGCATAAGAAAGTTGATCAAGGCATATTTCTTAGCCTCTTCTGTTCCCTTCTATCTCACACAATGGCACTCTCCAACGTCTTCATTCTGTGCGTATTCGTCGGAATCAACATGGCCCTGCCGGCGCGGGCCAAAGTATACACTGTTGGAGACTCCTCTGGTTGGGCGGTCGGTGCTGATTATGGCACCTGGGCTAGTGGCATAACCTTCCAAGTCGGTGATTCTCTCGTGTTTAACTATGGAGCGGGGCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCCTGCACCACCGGTAATTCACTTTCAACAGCCAGCAGCGGAGCCACCACCATTGCCCTCAAGACCGCCGGCGCTCACTACTTCATATGTGCAGTTCCTGGCCATTGCAGTGGCGGCATGAAGCTTTCTGTTGATGTTAAGGCTGGAAAAGCCTCCGCTCCCTCTGCAACGCCTTCCTCCGGGAAGGGCTCGCCTGCCAGTGATACCCCAACTGCCACAACCGCCACTCCGTCCTCCTCCTCCTCCACCACCAACCCATACTCTACGGCATCGTCTTCTTCGGCCACTAGCCTTTCGCCGGTTGTTTCCATGCTGACTGTTTCTTGGGTTTCATACTGTGTGTTGCGACTGCTATGA 1611 0.473 MDLPQDIDLYLKESIDDSLGLPISLRTLESKLRASEESQRLLRQQRLSLLSKLKEKDQMIDRVKSEATMNAQALKKFVEENQKLASECANLLSQCHKWERECSLYDRDREALMEFGNEADERAKEAEFRAQQLEEEFGKLLQELQYYKHEYNMRPDGASSNSTAVEANLLESLLSKVTNKDAASAYTFLEANSGNEACKNLLTMWNCLKPSTQKVLSLVAEVKSLEKDKEHLRINLDRAEEEVKLLSDENNILNKENKRLLKLKDRNHLGSGGKHSSSASAKSNKRKSSPKTSSSIERKIDFEDIDTARTPLSPLQTNSPDSRMHKKVDQGIFLSLFCSLLSHTMALSNVFILCVFVGINMALPARAKVYTVGDSSGWAVGADYGTWASGITFQVGDSLVFNYGAGHTVDEVKESDYKSCTTGNSLSTASSGATTIALKTAGAHYFICAVPGHCSGGMKLSVDVKAGKASAPSATPSSGKGSPASDTPTATTATPSSSSSTTNPYSTASSSSATSLSPVVSMLTVSWVSYCVLRLL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0389 536 MobiDBLite consensus disorder prediction 272 290 - -
Lele26g0389 536 Gene3D - 366 471 IPR008972 -
Lele26g0389 536 MobiDBLite consensus disorder prediction 471 512 - -
Lele26g0389 536 CDD Phytocyanin 368 464 - -
Lele26g0389 536 ProSiteProfiles Phytocyanin domain profile. 368 466 IPR003245 GO:0009055
Lele26g0389 536 Coils Coil 74 101 - -
Lele26g0389 536 ProSitePatterns Type-1 copper (blue) proteins signature. 442 458 IPR028871 -
Lele26g0389 536 FunFam Blue copper 366 470 - -
Lele26g0389 536 Coils Coil 215 266 - -
Lele26g0389 536 Coils Coil 116 150 - -
Lele26g0389 536 Pfam Plastocyanin-like domain 378 458 IPR003245 GO:0009055
Lele26g0389 536 MobiDBLite consensus disorder prediction 264 296 - -
Lele26g0389 536 SUPERFAMILY Cupredoxins 367 464 IPR008972 -
Lele26g0389 536 MobiDBLite consensus disorder prediction 470 512 - -
Lele26g0389 536 Coils Coil 25 45 - -
Lele26g0389 536 PANTHER EARLY ENDOSOME ANTIGEN 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0389 Lele-ChrLele26 2345768 2350798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0389 354 504 Miscellaneous Gene Families AT1G22480 44.156 5.37e-33 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0405 01 2380816 2383120 Lele26g0389 26 2345768 2350798 CCT
Lele02g0404 02 2358552 2360371 Lele26g0389 26 2345768 2350798 CCT
Lele03g0417 03 2386616 2388460 Lele26g0389 26 2345768 2350798 CCT
Lele04g0411 04 2446930 2448750 Lele26g0389 26 2345768 2350798 CCT
Lele26g0389 26 2345768 2350798 Lele28g0384 28 2360061 2365021 hybridization